Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I05
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||...    38   0.001
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||...    33   0.056
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr...    31   0.17 
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||...    29   0.69 
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    29   0.69 
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    29   0.69 
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||...    27   3.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.5  

>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 205

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 13/28 (46%), Positives = 24/28 (85%)
 Frame = +2

Query: 374 RREHLYKILVIGELGTGKTSIIKRYVHQ 457
           +++HL K++++GE G GKTSI+ +YV++
Sbjct: 4   KKKHLLKVIILGESGVGKTSIMNQYVNR 31



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 484 TIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVS 642
           TIG DF  K        ++ LQ WD A Q    +  V     A    +V+DV+
Sbjct: 40  TIGADFLTKEV-LVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVN 91


>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 33.1 bits (72), Expect = 0.056
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +1

Query: 484 TIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVS 642
           TIGVDF ++       T+  LQ WD A Q    T        A G  IV+DV+
Sbjct: 40  TIGVDFKIRTFELEGKTV-KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 91



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 9/23 (39%), Positives = 19/23 (82%)
 Frame = +2

Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
           ++L+K+L+IG+ G GK+ ++ R+
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRF 28


>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +1

Query: 469 NTIEQTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVS 642
           NT + TIG+DF  K       T + LQ WD A Q    +        +  A IV+D++
Sbjct: 38  NTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDIT 94



 Score = 29.1 bits (62), Expect = 0.91
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 389 YKILVIGELGTGKTSIIKRYVHQXLQST 472
           +K++ +GE   GKTS+I R+++    +T
Sbjct: 12  FKLVFLGEQSVGKTSLITRFMYDQFDNT 39


>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +1

Query: 478 EQTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVSXVATV 657
           E TIG  F  +       T + L+ WD A Q    +        A  A +V+D++  A++
Sbjct: 44  ESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASL 103

Query: 658 RR 663
            +
Sbjct: 104 EK 105


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 9/21 (42%), Positives = 19/21 (90%)
 Frame = +2

Query: 389 YKILVIGELGTGKTSIIKRYV 451
           +K++++G+ GTGKT+ +KR++
Sbjct: 10  FKLVLVGDGGTGKTTFVKRHL 30


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 484 TIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVS 642
           TIG+DF ++        I  LQ WD A Q    T        A G  +++DV+
Sbjct: 41  TIGIDFKIRTIELDGKRI-KLQIWDTAGQERFRTITTAYYRGAMGILLLYDVT 92



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +2

Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
           ++L K+L+IG+ G GK+ ++ R+
Sbjct: 7   DYLIKLLLIGDSGVGKSCLLLRF 29


>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 371 ERREHLYKILVIGELGTGKTSIIKRYV 451
           E  ++L KI++ G  GTGK+ +++R+V
Sbjct: 4   ESYDYLVKIVLAGPSGTGKSCLLQRFV 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 846 PSATPXPXXSPXPPPSPS 899
           P+A P P  +P PPP+P+
Sbjct: 464 PAAPPLPPAAPAPPPAPA 481


>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 214

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 8/23 (34%), Positives = 19/23 (82%)
 Frame = +2

Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
           ++L+K ++IG+ G GK++++ R+
Sbjct: 8   DYLFKTVLIGDSGVGKSNLLMRF 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 837  PSXPSATPXPXXSPXPPPSP 896
            P  PSA P P   P  PP P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,605
Number of Sequences: 5004
Number of extensions: 49190
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)