Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_I05
(905 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical p... 42 5e-04
DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GL... 42 5e-04
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 35 0.092
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 34 0.12
Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical pr... 33 0.21
U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein. 33 0.21
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 33 0.21
AL032632-1|CAA21582.1| 248|Caenorhabditis elegans Hypothetical ... 33 0.28
U68260-1|AAB16975.1| 69|Caenorhabditis elegans rab19-like prot... 33 0.37
AL132865-6|CAB60605.1| 210|Caenorhabditis elegans Hypothetical ... 33 0.37
U97592-7|AAB52874.2| 332|Caenorhabditis elegans Sperm-specific ... 32 0.49
U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family prot... 32 0.49
U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like prot... 32 0.49
U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein. 32 0.65
AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical ... 32 0.65
AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family pr... 32 0.65
AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein. 32 0.65
Z11505-4|CAA77590.1| 205|Caenorhabditis elegans Hypothetical pr... 31 1.1
U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein. 31 1.1
Z92830-4|CAB07357.1| 203|Caenorhabditis elegans Hypothetical pr... 31 1.5
U43283-2|AAC69020.1| 205|Caenorhabditis elegans Rab family prot... 31 1.5
U68263-1|AAB16978.1| 115|Caenorhabditis elegans rab-like protein. 30 2.0
U39996-4|AAA81090.2| 266|Caenorhabditis elegans Hypothetical pr... 30 2.0
AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical ... 30 2.0
U68253-1|AAB16968.1| 65|Caenorhabditis elegans rab6-like protein. 30 2.6
AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family pr... 30 2.6
Z92803-6|CAB07240.1| 215|Caenorhabditis elegans Hypothetical pr... 29 3.5
AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical ... 29 3.5
AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein. 29 3.5
Z93391-6|CAJ85753.1| 198|Caenorhabditis elegans Hypothetical pr... 29 4.6
U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein. 29 4.6
U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein. 29 4.6
U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like prot... 29 4.6
U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family pro... 29 4.6
U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family pro... 29 4.6
AL032621-1|CAA21489.1| 216|Caenorhabditis elegans Hypothetical ... 29 4.6
AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family pr... 29 4.6
AC024859-6|AAK29982.1| 195|Caenorhabditis elegans Hypothetical ... 29 4.6
AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein. 29 4.6
Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 6.0
U68254-1|AAB16969.1| 67|Caenorhabditis elegans rab6-like protein. 28 8.0
U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein. 28 8.0
>Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical
protein R07B1.12 protein.
Length = 212
Score = 42.3 bits (95), Expect = 5e-04
Identities = 23/58 (39%), Positives = 29/58 (50%)
Frame = +1
Query: 484 TIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVSXVATV 657
TIGVDFALK+ T++ LQ WDI+ Q G A A IV D + T+
Sbjct: 43 TIGVDFALKILPVDENTVVHLQIWDISGQDRYGVMTRVYYKDAHAAIIVLDSTRERTI 100
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +2
Query: 389 YKILVIGELGTGKTSIIKRYVHQXLQS 469
YK+LVIG+ G GKTSII+R+VH S
Sbjct: 12 YKVLVIGDPGVGKTSIIRRFVHNVFSS 38
>DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GLO-1
protein.
Length = 212
Score = 42.3 bits (95), Expect = 5e-04
Identities = 23/58 (39%), Positives = 29/58 (50%)
Frame = +1
Query: 484 TIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVSXVATV 657
TIGVDFALK+ T++ LQ WDI+ Q G A A IV D + T+
Sbjct: 43 TIGVDFALKILPVDENTVVHLQIWDISGQDRYGVMTRVYYKDAHAAIIVLDSTRERTI 100
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +2
Query: 389 YKILVIGELGTGKTSIIKRYVHQXLQS 469
YK+LVIG+ G GKTSII+R+VH S
Sbjct: 12 YKVLVIGDPGVGKTSIIRRFVHNVFSS 38
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 34.7 bits (76), Expect = 0.092
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = +1
Query: 484 TIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVSXVAT--- 654
TIGVDF ++ TI LQ WD A Q T A G +V+D++ T
Sbjct: 43 TIGVDFKIRTIELDGKTI-KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDITDQETFNN 101
Query: 655 VRRCXQVAQXXXCXSPXXRXXGHXC 729
V++ Q C + G+ C
Sbjct: 102 VKQWLQEIDRYACENVNKLLVGNKC 126
Score = 28.3 bits (60), Expect = 8.0
Identities = 9/23 (39%), Positives = 19/23 (82%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
++L+K+L+IG+ G GK+ ++ R+
Sbjct: 9 DYLFKLLLIGDSGVGKSCLLLRF 31
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +1
Query: 469 NTIEQTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDV 639
N + T+GVDF +K N + LQ WD A Q + A GA +V+DV
Sbjct: 488 NQLPSTLGVDFHVKTVNVDGRN-VALQLWDTAGQERFRSLCKSYFRRADGAILVYDV 543
>Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical
protein W03C9.3 protein.
Length = 209
Score = 33.5 bits (73), Expect = 0.21
Identities = 11/28 (39%), Positives = 23/28 (82%)
Frame = +2
Query: 374 RREHLYKILVIGELGTGKTSIIKRYVHQ 457
R++ L K++++G+ G GKTS++ +YV++
Sbjct: 5 RKKALLKVIILGDSGVGKTSLMNQYVNR 32
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +1
Query: 469 NTIEQTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVSXV 648
N + TIG DF + N T+ LQ WD A Q + V A + FDV+
Sbjct: 36 NQYKATIGADFLTRDVNIDDRTVT-LQIWDTAGQERFQSLGVAFYRGADCCVLAFDVTNA 94
Query: 649 ATVR 660
A+ +
Sbjct: 95 ASFK 98
>U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein.
Length = 66
Score = 33.5 bits (73), Expect = 0.21
Identities = 11/23 (47%), Positives = 20/23 (86%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
+HL+K+L+IG+ G GK+S++ R+
Sbjct: 8 DHLFKLLIIGDSGVGKSSLLLRF 30
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 33.5 bits (73), Expect = 0.21
Identities = 11/23 (47%), Positives = 20/23 (86%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
+HL+K+L+IG+ G GK+S++ R+
Sbjct: 8 DHLFKLLIIGDSGVGKSSLLLRF 30
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 484 TIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVS 642
TIGVDF ++ + + + LQ WD A Q T G +V+DV+
Sbjct: 42 TIGVDFKIRTMD-INGQRVKLQIWDTAGQERFRTITSTYYRGTHGVVVVYDVT 93
>AL032632-1|CAA21582.1| 248|Caenorhabditis elegans Hypothetical
protein Y11D7A.4 protein.
Length = 248
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 481 QTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVS 642
QT+G+DF + + +Q WDI QS +G T A F+V+DV+
Sbjct: 66 QTLGLDFFSRRITLPHEMQVLVQVWDIGGQSIAGEMIDKYLTGANIVFLVYDVT 119
>U68260-1|AAB16975.1| 69|Caenorhabditis elegans rab19-like
protein.
Length = 69
Score = 32.7 bits (71), Expect = 0.37
Identities = 9/23 (39%), Positives = 21/23 (91%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
++L+KI+++G++G GKT +++R+
Sbjct: 8 DYLFKIVLVGDMGVGKTCVVQRF 30
>AL132865-6|CAB60605.1| 210|Caenorhabditis elegans Hypothetical
protein Y62E10A.9 protein.
Length = 210
Score = 32.7 bits (71), Expect = 0.37
Identities = 9/23 (39%), Positives = 21/23 (91%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
++L+KI+++G++G GKT +++R+
Sbjct: 8 DYLFKIVLVGDMGVGKTCVVQRF 30
>U97592-7|AAB52874.2| 332|Caenorhabditis elegans Sperm-specific
family, class rprotein 2 protein.
Length = 332
Score = 32.3 bits (70), Expect = 0.49
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 371 ERREHLYKILVIGELGTGKTSIIKRYVHQXLQS 469
E E Y+++V+G GKT+II+RY++ S
Sbjct: 12 EMCEERYRLVVLGSAKVGKTNIIRRYLYNEFSS 44
>U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family protein
10 protein.
Length = 201
Score = 32.3 bits (70), Expect = 0.49
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +1
Query: 472 TIEQTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVS 642
T TIG+DF +K I LQ WD A Q T A G +V+D++
Sbjct: 37 TFISTIGIDFKIKTIELKGKKI-KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT 92
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 386 LYKILVIGELGTGKTSIIKRYVHQXLQST 472
L+K+L+IG+ G GKT I+ R+ +T
Sbjct: 9 LFKLLLIGDSGVGKTCILYRFSDDAFNTT 37
>U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like
protein.
Length = 124
Score = 32.3 bits (70), Expect = 0.49
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +1
Query: 472 TIEQTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVS 642
T TIG+DF +K I LQ WD A Q T A G +V+D++
Sbjct: 37 TFISTIGIDFKIKTIELKGKKI-KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT 92
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 386 LYKILVIGELGTGKTSIIKRYVHQXLQST 472
L+K+L+IG+ G GKT I+ R+ +T
Sbjct: 9 LFKLLLIGDSGVGKTCILYRFSDDAFNTT 37
>U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein.
Length = 123
Score = 31.9 bits (69), Expect = 0.65
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 469 NTIEQTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVS 642
N+ TIG+DF ++ I LQ WD A Q T A G +V+D++
Sbjct: 35 NSFISTIGIDFKIRTIELDGKKI-KLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT 91
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
++L+K+L+IG+ G GKT ++ R+
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFRF 28
>AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical
protein 4R79.2 protein.
Length = 395
Score = 31.9 bits (69), Expect = 0.65
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 484 TIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVS 642
TIGVDF +K I +Q WD A Q + A G ++FDV+
Sbjct: 234 TIGVDFTVKTMKIPPNRAIAMQLWDTAGQERFRSITKQYFRKADGVVLMFDVT 286
>AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family
protein 8 protein.
Length = 211
Score = 31.9 bits (69), Expect = 0.65
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 469 NTIEQTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVS 642
N+ TIG+DF ++ I LQ WD A Q T A G +V+D++
Sbjct: 35 NSFISTIGIDFKIRTIELDGKKI-KLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT 91
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
++L+K+L+IG+ G GKT ++ R+
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFRF 28
>AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein.
Length = 211
Score = 31.9 bits (69), Expect = 0.65
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 469 NTIEQTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVS 642
N+ TIG+DF ++ I LQ WD A Q T A G +V+D++
Sbjct: 35 NSFISTIGIDFKIRTIELDGKKI-KLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT 91
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
++L+K+L+IG+ G GKT ++ R+
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFRF 28
>Z11505-4|CAA77590.1| 205|Caenorhabditis elegans Hypothetical
protein F59B2.7 protein.
Length = 205
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +1
Query: 469 NTIEQTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVS 642
NT + TIG+DF K T I LQ WD A Q + + A +V+D++
Sbjct: 38 NTYQATIGIDFLSKTMYLEDRT-IRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDIT 94
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 389 YKILVIGELGTGKTSIIKRYVHQXLQST 472
+K++ +GE GKTSII R+++ +T
Sbjct: 12 FKLVFLGEQSVGKTSIITRFMYDSFDNT 39
>U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein.
Length = 70
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +2
Query: 374 RREHLYKILVIGELGTGKTSIIKRY 448
R++ L K++++G+ G GKTS++ +Y
Sbjct: 5 RKKALLKVIILGDSGVGKTSLMNQY 29
>Z92830-4|CAB07357.1| 203|Caenorhabditis elegans Hypothetical
protein F11A5.4 protein.
Length = 203
Score = 30.7 bits (66), Expect = 1.5
Identities = 9/30 (30%), Positives = 22/30 (73%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRYVHQXLQS 469
+H++K ++IG+ G GK++++ R++ + S
Sbjct: 4 DHVFKYVIIGDRGVGKSNLLLRFIGKPFDS 33
>U43283-2|AAC69020.1| 205|Caenorhabditis elegans Rab family protein
6.2 protein.
Length = 205
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 469 NTIEQTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVS 642
NT + TIG+DF K T + LQ WD A Q + + A +V+D++
Sbjct: 37 NTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT 93
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 389 YKILVIGELGTGKTSIIKRYVHQXLQST 472
+K++ +GE GKTS+I R+++ +T
Sbjct: 11 FKLVFLGEQSVGKTSLITRFMYDSFDNT 38
>U68263-1|AAB16978.1| 115|Caenorhabditis elegans rab-like protein.
Length = 115
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
+H K++V+G+ G GKTSII R+
Sbjct: 50 KHKAKVVVLGDSGVGKTSIIYRH 72
>U39996-4|AAA81090.2| 266|Caenorhabditis elegans Hypothetical
protein C56E6.2 protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
+H K++V+G+ G GKTSII R+
Sbjct: 50 KHKAKVVVLGDSGVGKTSIIYRH 72
>AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical
protein Y52B11A.4 protein.
Length = 467
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 389 YKILVIGELGTGKTSIIKRYV 451
YKI V+G+ GTGK+S+I + +
Sbjct: 238 YKIYVVGDTGTGKSSLISQLI 258
>U68253-1|AAB16968.1| 65|Caenorhabditis elegans rab6-like protein.
Length = 65
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 389 YKILVIGELGTGKTSIIKRYVHQXLQST 472
+K++ +GE GKTSII R+++ +T
Sbjct: 12 FKLVFLGEQSVGKTSIITRFMYDSFDNT 39
>AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family
protein 18, isoform b protein.
Length = 203
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 392 KILVIGELGTGKTSIIKRYV 451
KIL+IGE G GK+S++ R+V
Sbjct: 13 KILIIGESGVGKSSLMLRFV 32
>Z92803-6|CAB07240.1| 215|Caenorhabditis elegans Hypothetical
protein K01G5.4 protein.
Length = 215
Score = 29.5 bits (63), Expect = 3.5
Identities = 9/21 (42%), Positives = 19/21 (90%)
Frame = +2
Query: 389 YKILVIGELGTGKTSIIKRYV 451
+K++++G+ GTGKT+ +KR++
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHL 30
>AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical
protein Y87G2A.4 protein.
Length = 215
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
++L K L +G+ G GKTS + RY
Sbjct: 5 DYLIKFLALGDSGVGKTSFLHRY 27
>AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein.
Length = 215
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
++L K L +G+ G GKTS + RY
Sbjct: 5 DYLIKFLALGDSGVGKTSFLHRY 27
>Z93391-6|CAJ85753.1| 198|Caenorhabditis elegans Hypothetical
protein W04G5.2 protein.
Length = 198
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 383 HLYKILVIGELGTGKTSIIKRYVHQXLQSTL*SKPS 490
+L+KI++IG G GK++++ R+ + L SKP+
Sbjct: 7 YLFKIVLIGNPGVGKSNLLSRFTRN--EFNLKSKPT 40
>U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
++++K+L+IG GKTS + RY
Sbjct: 20 DYMFKLLIIGNSSVGKTSFLFRY 42
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 460 SSVNTIEQTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDV 639
S + T+G+DF +K + + LQ WD A Q T A G +++D+
Sbjct: 46 SFTSAFVSTVGIDFKVKTV-FRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDI 104
Query: 640 S 642
+
Sbjct: 105 T 105
>U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
++++K+L+IG GKTS + RY
Sbjct: 20 DYMFKLLIIGNSSVGKTSFLFRY 42
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 460 SSVNTIEQTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDV 639
S + T+G+DF +K + + LQ WD A Q T A G +++D+
Sbjct: 46 SFTSAFVSTVGIDFKVKTV-FRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDI 104
Query: 640 S 642
+
Sbjct: 105 T 105
>U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like
protein.
Length = 127
Score = 29.1 bits (62), Expect = 4.6
Identities = 8/23 (34%), Positives = 20/23 (86%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
++L+K+++IG+ G GK++++ R+
Sbjct: 9 DYLFKVVLIGDSGVGKSNLLSRF 31
>U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family
protein 3, isoform b protein.
Length = 219
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
++++K+L+IG GKTS + RY
Sbjct: 20 DYMFKLLIIGNSSVGKTSFLFRY 42
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 460 SSVNTIEQTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDV 639
S + T+G+DF +K + + LQ WD A Q T A G +++D+
Sbjct: 46 SFTSAFVSTVGIDFKVKTV-FRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDI 104
Query: 640 S 642
+
Sbjct: 105 T 105
>U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family
protein 3, isoform a protein.
Length = 233
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
++++K+L+IG GKTS + RY
Sbjct: 34 DYMFKLLIIGNSSVGKTSFLFRY 56
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 460 SSVNTIEQTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDV 639
S + T+G+DF +K + + LQ WD A Q T A G +++D+
Sbjct: 60 SFTSAFVSTVGIDFKVKTV-FRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDI 118
Query: 640 S 642
+
Sbjct: 119 T 119
>AL032621-1|CAA21489.1| 216|Caenorhabditis elegans Hypothetical
protein Y45F3A.2 protein.
Length = 216
Score = 29.1 bits (62), Expect = 4.6
Identities = 8/26 (30%), Positives = 20/26 (76%)
Frame = +2
Query: 371 ERREHLYKILVIGELGTGKTSIIKRY 448
E ++L+K++++G G GKT +++++
Sbjct: 2 EDYKYLFKVVLVGNAGVGKTCLVRKF 27
>AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family
protein 11.1 protein.
Length = 211
Score = 29.1 bits (62), Expect = 4.6
Identities = 8/23 (34%), Positives = 20/23 (86%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
++L+K+++IG+ G GK++++ R+
Sbjct: 9 DYLFKVVLIGDSGVGKSNLLSRF 31
>AC024859-6|AAK29982.1| 195|Caenorhabditis elegans Hypothetical
protein Y71H2AM.12 protein.
Length = 195
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +1
Query: 484 TIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDVS 642
TIG+DF K+ I LQ WD A Q A A +V D+S
Sbjct: 38 TIGIDFKHKIVQLNDGQSIRLQLWDTAGQERFRQLAPAYIRSARVALLVIDLS 90
>AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein.
Length = 219
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
++++K+L+IG GKTS + RY
Sbjct: 20 DYMFKLLIIGNSSVGKTSFLFRY 42
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 460 SSVNTIEQTIGVDFALKVXNWXSXTIIXLQXWDIARQSASGT*XVFITTXAXGAFIVFDV 639
S + T+G+DF +K + + LQ WD A Q T A G +++D+
Sbjct: 46 SFTSAFVSTVGIDFKVKTV-FRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDI 104
Query: 640 S 642
+
Sbjct: 105 T 105
>Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical
protein F11A5.3 protein.
Length = 201
Score = 28.7 bits (61), Expect = 6.0
Identities = 8/26 (30%), Positives = 20/26 (76%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRYVHQ 457
+H++K ++IG+ G GK++++ R+ +
Sbjct: 4 DHMFKYVIIGDGGVGKSNLLLRFTDE 29
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 840 SXPSATPXPXXSPXPPPSPS 899
S P+A P P P PPP+P+
Sbjct: 296 SAPAAAPPPPPPPPPPPAPA 315
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 840 SXPSATPXPXXSPXPPPSPS 899
S P+A P P P PPP+P+
Sbjct: 296 SAPAAAPPPPPPPPPPPAPA 315
>U68254-1|AAB16969.1| 67|Caenorhabditis elegans rab6-like protein.
Length = 67
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 469 NTIEQTIGVDFALKVXNWXSXTIIXLQXWDIA 564
NT + TIG+DF K T + LQ WD A
Sbjct: 37 NTYQATIGIDFLSKTMYLEDRT-VRLQMWDTA 67
>U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein.
Length = 69
Score = 28.3 bits (60), Expect = 8.0
Identities = 9/23 (39%), Positives = 19/23 (82%)
Frame = +2
Query: 380 EHLYKILVIGELGTGKTSIIKRY 448
++L+K+L+IG+ G GK+ ++ R+
Sbjct: 9 DYLFKLLLIGDSGVGKSCLLLRF 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,137,343
Number of Sequences: 27780
Number of extensions: 305636
Number of successful extensions: 1524
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1465
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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