Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I05
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.2  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           22   8.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   8.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 828 RXXPSXPSATPXPXXSPXPPPS 893
           R  P  PS  P P   P  PPS
Sbjct: 36  RGSPPNPSQGPPPGGPPGAPPS 57


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 277 GFIFVFLDVVSKDYVAETKATRRQ 348
           G + VFL+ V +D V  T+ T+R+
Sbjct: 57  GVLKVFLENVIRDAVTYTEHTKRK 80


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -3

Query: 450 TYRLI--MEVFPVPNSPMTRILYKCSRRSA 367
           T RL+  +E+   P S   R  Y+C  RSA
Sbjct: 40  TERLLPYVEIIEQPASKALRFRYECEGRSA 69


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -3

Query: 450 TYRLI--MEVFPVPNSPMTRILYKCSRRSA 367
           T RL+  +E+   P S   R  Y+C  RSA
Sbjct: 40  TERLLPYVEIIEQPASKALRFRYECEGRSA 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,313
Number of Sequences: 438
Number of extensions: 4226
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)