Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I04
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   143   3e-35
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   3.6  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   4.7  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  143 bits (346), Expect = 3e-35
 Identities = 78/186 (41%), Positives = 112/186 (60%), Gaps = 2/186 (1%)
 Frame = +3

Query: 81  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 254
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 255 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 434
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 435 YDAILEDLVFPX*DRRQAHQGSSWTAHSSXXXXXXXXXXXXXXXXVDTFQSVYXKLXGRE 614
           ++AILED+VFP  +        +     +                + +F SVY KL G+ 
Sbjct: 124 HNAILEDIVFPT-EIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKN 182

Query: 615 XDLRVP 632
                P
Sbjct: 183 VTFEFP 188


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -1

Query: 373 LGLGRILRSPTKTTCLPLNFFSSSRTS 293
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 243 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 335
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,718
Number of Sequences: 5004
Number of extensions: 46910
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)