Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_I04
(889 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 127 8e-30
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 127 8e-30
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 123 2e-28
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 116 2e-26
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 116 2e-26
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 1.8
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 1.8
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M... 28 7.2
At2g07110.1 68415.m00813 hypothetical protein 28 7.2
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 9.5
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 127 bits (307), Expect = 8e-30
Identities = 65/131 (49%), Positives = 95/131 (72%), Gaps = 2/131 (1%)
Frame = +3
Query: 81 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 254
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 255 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 434
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 435 YDAILEDLVFP 467
++A+LED+ +P
Sbjct: 123 HEAMLEDVAYP 133
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 127 bits (307), Expect = 8e-30
Identities = 65/131 (49%), Positives = 95/131 (72%), Gaps = 2/131 (1%)
Frame = +3
Query: 81 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 254
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 255 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 434
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 435 YDAILEDLVFP 467
++A+LED+ +P
Sbjct: 123 HEAMLEDVAYP 133
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 123 bits (296), Expect = 2e-28
Identities = 66/131 (50%), Positives = 92/131 (70%), Gaps = 2/131 (1%)
Frame = +3
Query: 81 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 254
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 255 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 434
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSV 122
Query: 435 YDAILEDLVFP 467
++A+LED+ FP
Sbjct: 123 HEAMLEDVAFP 133
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 116 bits (280), Expect = 2e-26
Identities = 60/131 (45%), Positives = 91/131 (69%), Gaps = 2/131 (1%)
Frame = +3
Query: 81 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 254
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 255 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 434
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 435 YDAILEDLVFP 467
++AIL+D+V P
Sbjct: 123 HEAILDDVVLP 133
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 116 bits (280), Expect = 2e-26
Identities = 60/131 (45%), Positives = 91/131 (69%), Gaps = 2/131 (1%)
Frame = +3
Query: 81 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 254
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 255 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 434
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 435 YDAILEDLVFP 467
++AIL+D+V P
Sbjct: 123 HEAILDDVVLP 133
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 395 QTKEATLKDIDLCVRCYPRGLG 460
Q +E++LK CVRCYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 395 QTKEATLKDIDLCVRCYPRGLG 460
Q +E++LK CVRCYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 764
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +3
Query: 57 RKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEI---ELHN 227
+ +++ T +KA SF+ I + +EL T+ DL+ E EI EL
Sbjct: 547 KALIRELTSSVKAGQDRKVSFQAEIERLKMELSTSKDLEKGFAEKIGFMEMEIRGEELSK 606
Query: 228 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSG 326
K + V + KA ++ L K +G
Sbjct: 607 KVVDLTSVAQGEKKAVHDAKVELAAAYSKLLAG 639
>At2g07110.1 68415.m00813 hypothetical protein
Length = 150
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = -1
Query: 487 ACLRSQXGKTKSSRIASYTEVNVLERGLFCLLATRVLWLGLGRILRSPTKTTCLPLNFFS 308
ACL+S G K R+ + ERGLFC L R + IL+ ++ C+ L
Sbjct: 47 ACLKSY-GSLKPDRLVIVNAFSFSERGLFCRL--RKVEKEYETILKRTLQSICV-LRVVP 102
Query: 307 SSRTSLI 287
++ TS+I
Sbjct: 103 NTTTSVI 109
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +3
Query: 216 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 365
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,499,632
Number of Sequences: 28952
Number of extensions: 257853
Number of successful extensions: 699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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