Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_H22
         (963 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_16220| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 901

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 963 RGGGXXEKXPGXXPFXGGGPFXG 895
           RGGG   K P   PF G  PF G
Sbjct: 758 RGGGAYGKTPATRPFYGSWPFAG 780


>SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 226 PEVHDFVDHVGPCDVPQCFCDRP 294
           PE+ D  D  GPC VP  F D P
Sbjct: 10  PEIQDNPDGWGPCSVPTAFKDIP 32


>SB_16220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 106 LFVVAAVGYVTGQHFPTRKCPKGEH 180
           LF +A + ++TG H  TRK P GEH
Sbjct: 354 LFAMATLYFLTGYHLWTRK-PPGEH 377


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,591,843
Number of Sequences: 59808
Number of extensions: 420176
Number of successful extensions: 810
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2836293838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)