Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_H20
         (963 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   2e-04
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)                 33   0.35 
SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)                31   1.1  
SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16)                 30   3.2  
SB_6447| Best HMM Match : DUF164 (HMM E-Value=0.48)                    30   3.2  
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)                  29   7.4  

>SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = +2

Query: 140 MADQLTEEQIAEFKEAFSLFE 202
           MADQLTEEQIAEFKEAFSLF+
Sbjct: 1   MADQLTEEQIAEFKEAFSLFD 21


>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
          Length = 507

 Score = 33.1 bits (72), Expect = 0.35
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -2

Query: 692 PKGGXXXFXGGXXKNKXKGGGGXXGGXXGGXXXFXXKKXRPPPXK 558
           P+GG     GG       GGGG  GG  GG   F  +   PPP +
Sbjct: 335 PRGGSGR--GGGGGGGGGGGGGGGGGGRGGGGGFSSRGRGPPPRR 377


>SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)
          Length = 420

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 12/19 (63%), Positives = 18/19 (94%)
 Frame = +2

Query: 146 DQLTEEQIAEFKEAFSLFE 202
           ++L+EEQ+AE KEAF+LF+
Sbjct: 282 EKLSEEQVAELKEAFALFD 300


>SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16)
          Length = 285

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 146 DQLTEEQIAEFKEAFSLFEXKRRWHHHDXRXGPXXXXPLGXNPXKTXXXXLI 301
           ++L++ QIAE+KEAF++F+  R         G      LG NP +     +I
Sbjct: 2   EKLSKAQIAEYKEAFNMFDNDRNGTICSHELG-SVMRALGQNPTEDMIRDMI 52


>SB_6447| Best HMM Match : DUF164 (HMM E-Value=0.48)
          Length = 598

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 122 NQVNLQMADQLT--EEQIAEFKEAFSLFEXKRRWHHHD 229
           N +NLQ  +Q    EE++ EF+    L E ++R+H H+
Sbjct: 356 NNINLQREEQKRKFEEELEEFQNEEKLEERRQRYHVHE 393


>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
          Length = 252

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 689 KGGXXXFXGGXXKNKXKGGGGXXGGXXGG 603
           KGG     GG      +GGGG  GG  GG
Sbjct: 199 KGGYGGGSGGGGYGGGRGGGGYGGGHGGG 227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,840,505
Number of Sequences: 59808
Number of extensions: 141107
Number of successful extensions: 275
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2836293838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)