Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_H19
         (943 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.10 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.24 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   6.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 23/80 (28%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
 Frame = +2

Query: 707  HPPVXXXSXXRXPXPPXPXXXXPPXPRGXSRXXXT-LPXXPXXPPXXPLXXPPNXXPXSP 883
            HPP    S      P  P    PP P+  S+     LP     P   P   PP   P S 
Sbjct: 990  HPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTST 1049

Query: 884  XFXXXLSFPXPXXAPPXXXP 943
                  S   P   PP   P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAP 1069



 Score = 31.1 bits (67), Expect = 0.24
 Identities = 21/78 (26%), Positives = 24/78 (30%)
 Frame = +2

Query: 710  PPVXXXSXXRXPXPPXPXXXXPPXPRGXSRXXXTLPXXPXXPPXXPLXXPPNXXPXSPXF 889
            PPV   S  + P  P P    PP P   +     +P      P      P    P     
Sbjct: 1012 PPVPKLSS-KAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPS 1070

Query: 890  XXXLSFPXPXXAPPXXXP 943
                S P P  APP   P
Sbjct: 1071 SEIPSIPAPSGAPPVPAP 1088



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 18/67 (26%), Positives = 20/67 (29%)
 Frame = +2

Query: 743  PXPPXPXXXXPPXPRGXSRXXXTLPXXPXXPPXXPLXXPPNXXPXSPXFXXXLSFPXPXX 922
            P P  P    PP P        T       PP  PL  P +  P +P             
Sbjct: 961  PRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSK 1020

Query: 923  APPXXXP 943
            APP   P
Sbjct: 1021 APPVPLP 1027



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 22/78 (28%), Positives = 22/78 (28%)
 Frame = +2

Query: 710  PPVXXXSXXRXPXPPXPXXXXPPXPRGXSRXXXTLPXXPXXPPXXPLXXPPNXXPXSPXF 889
            PPV   S    P P  P    PP P          P     P   P   PP   P     
Sbjct: 1092 PPVPKPSVAAPPVPK-PSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPS---- 1146

Query: 890  XXXLSFPXPXXAPPXXXP 943
                  P P  APP   P
Sbjct: 1147 VAAPPVPAPSGAPPVPKP 1164


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 18/62 (29%), Positives = 21/62 (33%)
 Frame = +2

Query: 758 PXXXXPPXPRGXSRXXXTLPXXPXXPPXXPLXXPPNXXPXSPXFXXXLSFPXPXXAPPXX 937
           P    PP P+   R   + P  P  PP  P   PP     +P     L  P    AP   
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPP-IPSKAPPIPSSLPPPAQPAAPVKS 183

Query: 938 XP 943
            P
Sbjct: 184 PP 185



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/58 (25%), Positives = 18/58 (31%)
 Frame = +2

Query: 758 PXXXXPPXPRGXSRXXXTLPXXPXXPPXXPLXXPPNXXPXSPXFXXXLSFPXPXXAPP 931
           P    PP P        + P  P   P  P   PP   P +P      +   P   PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
 Frame = +2

Query: 743 PXPPXPXXXXPPXPR-GXSRXXXT--LPXXPXXPPXXPLXXPPNXXPXSPXFXXXLSFPX 913
           P P  P    P  P  G +    T  +P  P  PP  P   PP+  P  P      + P 
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP-MGAPAAPPL 449

Query: 914 PXXAP 928
           P  AP
Sbjct: 450 PPSAP 454


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 271 RHASRREKGGQV---SGKRQGRNRRAHEGASR 185
           +   RRE+GG+V   SG+ + R+   HE  SR
Sbjct: 95  KRGGRRERGGRVHGDSGRLRSRSPSPHEARSR 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,846
Number of Sequences: 5004
Number of extensions: 39749
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)