Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_H19
         (943 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    31   1.6  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    30   2.1  
L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    29   6.4  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   6.4  
Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical ...    28   8.4  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/58 (31%), Positives = 20/58 (34%)
 Frame = +2

Query: 743 PXPPXPXXXXPPXPRGXSRXXXTLPXXPXXPPXXPLXXPPNXXPXSPXFXXXLSFPXP 916
           P PP P     P PR  S      P  P  P   P   PP+  P +P        P P
Sbjct: 139 PPPPPPRVPRTPPPR--SPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPP 194


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/67 (31%), Positives = 23/67 (34%)
 Frame = -2

Query: 942 GXXXGGAXXGXGKEXXXXKXGXXGXXLGGXXRGXXGGXXGXXGXVXXXREXPRGXGGXXX 763
           G   GG   G G +      G  G  +GG   G  GG  G  G          G GG   
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGG---------MGGGGYGG 217

Query: 762 XGXGGXG 742
            G GG G
Sbjct: 218 GGDGGYG 224


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/76 (27%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
 Frame = +2

Query: 710 PPVXXXSXXRXPXPPXPXXXXPPXP--RGXSRXXXTLPXXPXXPPXXPLXXPPNXXPXSP 883
           PP       R P PP      PP P  R        +P  P      P   PP   P  P
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 356

Query: 884 XFXXXLSFPXPXXAPP 931
                +  P P   PP
Sbjct: 357 SAGPGMYPPPPPSRPP 372


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/76 (27%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
 Frame = +2

Query: 710 PPVXXXSXXRXPXPPXPXXXXPPXP--RGXSRXXXTLPXXPXXPPXXPLXXPPNXXPXSP 883
           PP       R P PP      PP P  R        +P  P      P   PP   P  P
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 366

Query: 884 XFXXXLSFPXPXXAPP 931
                +  P P   PP
Sbjct: 367 SAGPGMYPPPPPSRPP 382


>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 162 YKXTXRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIA 284
           Y+   +F +E    ALL +   +P+TC   +  E W FL A
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 20/67 (29%), Positives = 20/67 (29%)
 Frame = +2

Query: 743 PXPPXPXXXXPPXPRGXSRXXXTLPXXPXXPPXXPLXXPPNXXPXSPXFXXXLSFPXPXX 922
           P P  P     P   G S    T P  P   P  P   P N  P         S P P  
Sbjct: 436 PPPSAPPTIKFPISTGTSYSSTTPPTTPKPAPPPPSRIP-NPSPSPQPAEVSKSPPPPPP 494

Query: 923 APPXXXP 943
            PP   P
Sbjct: 495 LPPIATP 501


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 20/67 (29%), Positives = 20/67 (29%)
 Frame = +2

Query: 743 PXPPXPXXXXPPXPRGXSRXXXTLPXXPXXPPXXPLXXPPNXXPXSPXFXXXLSFPXPXX 922
           P P  P     P   G S    T P  P   P  P   P N  P         S P P  
Sbjct: 443 PPPSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIP-NPSPSPQPAEVSKSPPPPPP 501

Query: 923 APPXXXP 943
            PP   P
Sbjct: 502 LPPIATP 508


>Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical
           protein Y48E1B.1 protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
 Frame = +2

Query: 743 PXPPXPXXXXP-PXPRGXSRXXXTLPXX--PXXPPXXPLXXPPNXXPXSPXFXXXLSF 907
           P PP P    P P P         +P    P  PP  P   PP   P +P     ++F
Sbjct: 324 PPPPPPMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPPPPPPPQTPSASSSVTF 381


>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
 Frame = -2

Query: 942 GXXXGGAXXGX-GKEXXXXKXGXXGXXLGGXXRGXXGGXXGXXGXVXXXREXPRGXGGXX 766
           G   GG   G  G      + G  G   GG   G  GG  G        R  PRG  G  
Sbjct: 32  GGGRGGYGGGDRGSFGGGDRGGFRGGRGGGDRGGFRGGRGGGDRGGFGGRGSPRGGFGGR 91

Query: 765 XXGXGGXGXRXXEXXXTGG 709
               GG G         GG
Sbjct: 92  GSPRGGRGSPRGGRGGAGG 110


>AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical
           protein M151.1 protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -3

Query: 338 HSPAWSERPTPN*XTYSVSYEKAPRFPKGERRTGIR*AAGSEQESARGSFQGETPGXF 165
           H  AW+ R  P    ++ +  K  ++ K E + G     G+E+       +G+T   F
Sbjct: 96  HDKAWNNRSLPQKSRWNQASVKLAQYQKAEEKMGFIKVFGTEEFQNYSKRRGQTRNSF 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,032,297
Number of Sequences: 27780
Number of extensions: 272671
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)