Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_H18
         (953 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...   114   2e-26
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   2.7  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    27   2.9  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   3.9  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   4.0  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   9.0  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score =  114 bits (274), Expect = 2e-26
 Identities = 56/102 (54%), Positives = 73/102 (71%)
 Frame = +3

Query: 126 KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLW 305
           KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI  FA+K M T ++RVD  LNK +W
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVW 65

Query: 306 SKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIK 431
            +G+RNVP           +D++D A  L+T V  V VA+ K
Sbjct: 66  KRGIRNVPHRLRLRLSRKRSDEDDKA--LYTYVQAVDVANPK 105


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.4 bits (48), Expect(2) = 2.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 700 PXSPPPPPP 726
           P  PPPPPP
Sbjct: 21  PSQPPPPPP 29



 Score = 22.2 bits (45), Expect(2) = 2.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 691 PXXPXSPPPPP 723
           P  P  PPPPP
Sbjct: 6   PGNPPPPPPPP 16


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -2

Query: 274 RMSGVPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAI 95
           R+  +P+ F    R+    +G   L PT   R+ K   Y    TS M  L  +S LGL +
Sbjct: 45  RLIHIPLSFLQQPRVIAEIIGGIVLGPTVMGRIPKFLDYI-FPTSSMGPLNLVSNLGLVL 103

Query: 94  VI 89
            +
Sbjct: 104 FL 105


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 299 EFV*ASVYSNVRSSHLFFSELSDFFDCSWGTLFKSNTMKSF 177
           E V  S+Y N R  +L ++       CSW +  +S+T  S+
Sbjct: 68  EAVRDSIYQNKRGMYLAYAFGIAILACSWASAIQSSTTYSY 108


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.0 bits (47), Expect(2) = 4.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 700 PXSPPPPPP 726
           P  PPPPPP
Sbjct: 306 PPPPPPPPP 314



 Score = 22.2 bits (45), Expect(2) = 4.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 709 PPPPPPXXXXFF 744
           PPPPPP    F+
Sbjct: 308 PPPPPPPSNDFW 319


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 475 GVYSWLASTFSVCKPLID 422
           GV  WLAST+S C  +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,355
Number of Sequences: 5004
Number of extensions: 44016
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)