Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_H18
         (953 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   1e-08
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  41   0.001
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  

>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 28/52 (53%), Positives = 36/52 (69%)
 Frame = +3

Query: 54  FLTLEFRYTKLKITMAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKR 209
           FL L+F +      M K   ++KG+SAINEVVTREYT+NLHKR+HG+    R
Sbjct: 760 FLLLDFSFK-----MVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYR 806



 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
 Frame = +3

Query: 171  LHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVR--NVPFXXXX 344
            +H    G  F      + K ++K  +K+  +    V TR       K +   NVP+    
Sbjct: 750  IHNAARGCNFFLLLDFSFKMVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYRVRV 809

Query: 345  XXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 464
                  N+DEDS HKL+TLVT V V++ KGLQT+ V++ +
Sbjct: 810  RLARKRNEDEDSPHKLYTLVTSVAVSTFKGLQTQKVESEE 849


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 20/42 (47%), Positives = 25/42 (59%)
 Frame = +3

Query: 321 NVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTE 446
           NVP+          N+DEDS HKL+TLVT V V++ K L  E
Sbjct: 2   NVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKVLADE 43


>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 691 PXXPXSPPPPPPXXXXFFXXXPGG 762
           P  P  PPPPPP         PGG
Sbjct: 872 PPPPPPPPPPPPPPASSTGSTPGG 895


>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1442

 Score = 24.6 bits (51), Expect(2) = 9.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 691 PXXPXSPPPPPP 726
           P  P  PPPPPP
Sbjct: 721 PSYPTLPPPPPP 732



 Score = 21.8 bits (44), Expect(2) = 9.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 709 PPPPPPXXXXF 741
           PPPPPP    F
Sbjct: 729 PPPPPPQTTPF 739


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,624,973
Number of Sequences: 59808
Number of extensions: 342713
Number of successful extensions: 1518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2800542235
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)