Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_H12
(966 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.3
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 2.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 27 5.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 5.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.9
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 26 6.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 9.1
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 26 9.1
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 674 QAVSVDIELS-PPSXXXPXPXPPPPXPP 754
+AVS +I + P P P PPPP PP
Sbjct: 217 RAVSPEIPPTYTPKQADPLPAPPPPPPP 244
Score = 23.8 bits (49), Expect(2) = 1.3
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 701 SPPSXXXPXPXPPPP 745
S PS P P PPPP
Sbjct: 182 SLPSDYNPPPPPPPP 196
Score = 23.0 bits (47), Expect(2) = 1.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 728 PXPPPPXPP 754
P PPPP PP
Sbjct: 189 PPPPPPPPP 197
Score = 22.2 bits (45), Expect(2) = 6.1
Identities = 12/40 (30%), Positives = 15/40 (37%)
Frame = +2
Query: 626 PPQEVDPXXSXEARQRQAVSVDIELSPPSXXXPXPXPPPP 745
P V P S + A + + P P P PPPP
Sbjct: 161 PNSMVSPPPSFQPPSAAAPATSL---PSDYNPPPPPPPPP 197
Score = 22.2 bits (45), Expect(2) = 6.1
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 728 PXPPPPXPPXP 760
P P PP PP P
Sbjct: 234 PLPAPPPPPPP 244
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.0 bits (47), Expect(2) = 2.2
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +2
Query: 704 PPSXXXPXPXPPPPXP 751
P P P PPPP P
Sbjct: 899 PTIITHPTPPPPPPLP 914
Score = 23.0 bits (47), Expect(2) = 2.2
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 728 PXPPPPXPP 754
P PPPP PP
Sbjct: 945 PPPPPPPPP 953
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +2
Query: 704 PPSXXXPXPXPPPPXPPXPXXXXXPXXXXXRGAGXPPFXXGXLRPP 841
PPS P P P PP P P AG PP + P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTP-SAGLPPVPVPTAKAP 1237
Score = 26.6 bits (56), Expect = 5.2
Identities = 21/84 (25%), Positives = 22/84 (26%)
Frame = +2
Query: 707 PSXXXPXPXPPPPXPPXPXXXXXPXXXXXRGAGXPPFXXGXLRPPTXXXXXXGGFGXPPX 886
PS P P P PP P P A PP PP P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAA-PPVPAPSGAPPVPKPSVAAPPVPAPS 1175
Query: 887 XXFXXXPXXXXGKTXXXPPSXSXP 958
P G PPS + P
Sbjct: 1176 SGIPPVPKPAAGVPPVPPPSEAPP 1199
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 432 LGRALDVLPRLFQSLLGLAVRVSERXPGDSW 340
+G + L RLF SL GL ++ PG+ W
Sbjct: 410 VGTVIQGLSRLFSSLYGLRFVPADISPGEVW 440
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 695 ELSPPSXXXPXPXPPPPXP 751
EL PP+ P P PPP P
Sbjct: 136 ELRPPTSAPPRPSIPPPSP 154
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 704 PPSXXXPXPXPPPPXPP 754
PP P PPPP PP
Sbjct: 767 PPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +3
Query: 690 ILNSPLPQXXXXXPXPXXXXPXXPXPPPXPXXXXXXAXXSPPSXRGXSXPXP 845
+L SP P P P PPP P PP G P P
Sbjct: 728 LLKSPPPPPPAVI-VPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.9
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 704 PPSXXXPXPXPPPPXPP 754
PP P PPPP PP
Sbjct: 14 PPPGFEPPSQPPPPPPP 30
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/42 (28%), Positives = 13/42 (30%)
Frame = +3
Query: 759 PXPPPXPXXXXXXAXXSPPSXRGXSXPXPXXXXXXAXLXXPP 884
P PPP P + PP R P P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 554 NVXETNXKMVPPNXDGRLRXLRXXPPQEVDPXXSXEARQRQAVSVDIEL 700
N T +P + L+ L PQ VD + E + ++VD++L
Sbjct: 370 NPPATTVSFIPADGTEPLKLLVNGEPQNVDETRASEILSQDELTVDVDL 418
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Frame = +2
Query: 701 SPPSXXXPXPXPPP-PXPPXPXXXXXP 778
+PP P P PPP PP P P
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAPPMP 1724
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 409 ASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQAL 287
AST+ K PWP + L +P + + CS+ +E ++ +
Sbjct: 38 ASTLEKEPWPASTALLVMPG---GRDMGYCSSFNETIYRKI 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,996
Number of Sequences: 5004
Number of extensions: 42465
Number of successful extensions: 216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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