Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_H06
         (936 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.94 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +3

Query: 636 GPPXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPP 737
           GPP  PP PG  GA           PP   PPPP
Sbjct: 760 GPPPPPPPPGVAGA----------GPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
 Frame = +3

Query: 786 PXPXFFFXPXXGGXPXPXLPP----GGXXXPPXXPXXXXFXXXPPPRGP 920
           P P     P     P P  PP    GG   PP  P        PPP  P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
 Frame = +3

Query: 726 PPPPFXGXXXXXXTXXXXXRPXPXFFFXPXXGGXPXPXLPPG--GXXXPPXXP 878
           PPPP                P P     P  GG P P  PPG  G   PP  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPA----PIMGGPPPPPPPPGVAGAGPPPPPP 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,271
Number of Sequences: 5004
Number of extensions: 35318
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)