Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_H06
(936 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 31 0.13
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.19
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.33
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) 33 0.33
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.44
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051) 32 0.77
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 31 1.0
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 31 1.3
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 31 1.3
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 31 1.8
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 30 2.3
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 30 3.1
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.1
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08) 26 4.7
SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05) 29 5.4
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 7.1
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069) 28 9.4
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 31.5 bits (68), Expect(2) = 0.13
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +3
Query: 642 PXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPPFXG 746
P PP G+ A GG PP PPPP G
Sbjct: 292 PPPPPADGSAPAPPPPPPPGGAPPPPPPPPPPPPG 326
Score = 21.8 bits (44), Expect(2) = 0.13
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +3
Query: 828 PXPXLPPGGXXXPPXXP 878
P P PPG PP P
Sbjct: 319 PPPPPPPGDGGAPPPPP 335
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 33.9 bits (74), Expect = 0.19
Identities = 26/79 (32%), Positives = 26/79 (32%)
Frame = +3
Query: 642 PXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPPFXGXXXXXXTXXXXXRPXPXFFFXPXXG 821
P PP PG A GG P PPPP P P P G
Sbjct: 920 PPPPPPPGG-NAPLPPPPPGGSAPSQ--PPPPGGNAPPPP--------PPPGGSAPPPGG 968
Query: 822 GXPXPXLPPGGXXXPPXXP 878
G P PPGG PP P
Sbjct: 969 GAPPLPPPPGGSAPPPPPP 987
Score = 31.5 bits (68), Expect = 1.0
Identities = 25/80 (31%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Frame = +3
Query: 699 GGXXPPXXXPPPPFXGXXXXXXTXXXXXRPXPXFFFXPXXGGXPXPXLPPGG------XX 860
GG PP PPPP G P P G P P PPGG
Sbjct: 916 GGSVPP---PPPPPGGNAPLPPPPPGGSAPSQP---PPPGGNAPPPPPPPGGSAPPPGGG 969
Query: 861 XPPXXPXXXXFXXXPPPRGP 920
PP P PPP P
Sbjct: 970 APPLPPPPGGSAPPPPPPPP 989
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 810 PXXGGXPXPXLPPGGXXXPPXXPXXXXFXXXPPPRG 917
P G P P PPGG P P PPP G
Sbjct: 914 PPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPG 949
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 639 PPXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPP 737
PP P GA GG PP PPPP
Sbjct: 958 PPGGSAPPPGGGAPPLPPPPGGSAPPPPPPPPP 990
Score = 29.1 bits (62), Expect = 5.4
Identities = 27/95 (28%), Positives = 27/95 (28%)
Frame = +1
Query: 376 PPGVVFPPXKXXXXGKXXX*KPPPLXXEKXXXGGPPPXXXXPPXPXXXXXXXXGGEXXPX 555
PPG PP G PPP PPP PP P GG P
Sbjct: 914 PPGGSVPPPPPPPGGNAPL--PPPPPGGSAPSQPPPPGGNAPPPP-----PPPGGSAPP- 965
Query: 556 XKKTXXPXGXXXQXXGGGGGXKKKXFXXPPXXPPP 660
P G GG PP PPP
Sbjct: 966 ------PGGGAPPLPPPPGGSAPPPPPPPPPPPPP 994
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 33.1 bits (72), Expect = 0.33
Identities = 24/78 (30%), Positives = 25/78 (32%)
Frame = +1
Query: 319 PPXPX*RXYCLAPPXSLXXPPGVVFPPXKXXXXGKXXX*KPPPLXXEKXXXGGPPPXXXX 498
PP P PP + PPG FPP G PPP GG PP
Sbjct: 241 PPPPHSMPPPGMPPPGMMPPPG--FPPMGMPGMGGM----PPPGMPPPMPPGGMPPNMEQ 294
Query: 499 PPXPXXXXXXXXGGEXXP 552
PP P G P
Sbjct: 295 PPPPPPSSGVSNSGMMPP 312
Score = 29.1 bits (62), Expect = 5.4
Identities = 19/67 (28%), Positives = 20/67 (29%)
Frame = +3
Query: 711 PPXXXPPPPFXGXXXXXXTXXXXXRPXPXFFFXPXXGGXPXPXLPPGGXXXPPXXPXXXX 890
PP PPPP P P GG P P +PP P P
Sbjct: 236 PPMGAPPPPHSMPPPGMPPPGMMPPPGFPPMGMPGMGGMPPPGMPP--PMPPGGMPPNME 293
Query: 891 FXXXPPP 911
PPP
Sbjct: 294 QPPPPPP 300
>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
Length = 245
Score = 33.1 bits (72), Expect = 0.33
Identities = 27/104 (25%), Positives = 32/104 (30%), Gaps = 1/104 (0%)
Frame = +3
Query: 600 GGGGGXXKKXFXGPPXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPPFXGXXXXXXTXXXX 779
GG ++ + G P PGA + G P P P G
Sbjct: 141 GGSYPPGQQPYPGQQAYPGQPGA--SPQGQPYPGQSYPQGQEPYPEKGGYPPAGVGQHSG 198
Query: 780 XRPX-PXFFFXPXXGGXPXPXLPPGGXXXPPXXPXXXXFXXXPP 908
P P + P GG P PPGG PP P PP
Sbjct: 199 PYPGQPGMWGPPPMGGPPPMGGPPGGYPPPPPPPGAGDPAYPPP 242
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 33.1 bits (72), Expect = 0.33
Identities = 27/94 (28%), Positives = 30/94 (31%)
Frame = -3
Query: 916 PRGGGXXXKXXXXGXXGGXXXPPGGRXGXGXPPXXGKKKKXGXGRXXXXXVXXXXXXPXX 737
P GG + GG PPG G G PP + G G+ P
Sbjct: 484 PGGGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQ---GWGQPPPGAGQGGGPPPPG 540
Query: 736 GGGGXXXGGXLPPXXXXXXXAPXAPGXGGXXGGP 635
G G GG PP P P G GGP
Sbjct: 541 AGQG---GGPPPPGAGQGWGQP--PPGAGQGGGP 569
Score = 32.3 bits (70), Expect = 0.58
Identities = 33/117 (28%), Positives = 33/117 (28%), Gaps = 8/117 (6%)
Frame = +3
Query: 591 PKXGGGGGXXKKXFXGPPXXPPXPGA---XGAXXXXXXXGGXXPP-----XXXPPPPFXG 746
P G GG G PP PGA G GG PP PPPP G
Sbjct: 494 PPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAG 553
Query: 747 XXXXXXTXXXXXRPXPXFFFXPXXGGXPXPXLPPGGXXXPPXXPXXXXFXXXPPPRG 917
P P G P P G PP P PPP G
Sbjct: 554 QGWGQPPPGAGQGGGP----PPPGAGQGGPPPPGAGQEGPP--PPGAGQGGGPPPPG 604
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 32.7 bits (71), Expect = 0.44
Identities = 48/208 (23%), Positives = 55/208 (26%), Gaps = 9/208 (4%)
Frame = +3
Query: 324 PPXLKXILFGPPXFPXXX-PXGGFPPPKXXXXGEKXXLKTPP-LXXRKIXXXGAPPXFXX 497
PP F PP P P G P P+ G PP ++ GAP
Sbjct: 433 PPGAPHPRFPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVP 492
Query: 498 PPXAXXXXXXXXGG---RXXPXXKKNXXXX--GXXXPKXGGGGGXXKKXFXGPPXXPPXP 662
PP A G R P + G P+ G + PP P P
Sbjct: 493 PPGAPHQRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRV---PPPGAPHP 549
Query: 663 GAX--GAXXXXXXXGGXXPPXXXPPPPFXGXXXXXXTXXXXXRPXPXFFFXPXXGGXPXP 836
GA G P PP T P G P
Sbjct: 550 RVPPPGASHPRVPPPGAPHPRVPPPGAPHPRVPPPGTPHPRVPPPGAPHPKVPPPGAPYQ 609
Query: 837 XLPPGGXXXPPXXPXXXXFXXXPPPRGP 920
LP G P P + PPP P
Sbjct: 610 RLPYSGAYHPRLPPPGPPYQRVPPPGAP 637
Score = 31.1 bits (67), Expect = 1.3
Identities = 41/184 (22%), Positives = 48/184 (26%), Gaps = 3/184 (1%)
Frame = +3
Query: 378 PXGGFPPPKXXXXGEKXXLKTPP-LXXRKIXXXGAPPXFXXPPXAXXXXXXXXGGRXXPX 554
P G P P+ G PP ++ GAP PP A G P
Sbjct: 402 PPPGAPHPRVPPPGASHQRVRPPGAPHPRVPPPGAPHPRFPPPGAPHPRVPPPGA---PH 458
Query: 555 XKKNXXXXGXXXPKXGGGGGXXKKXFXGPPXXPPXPGAXGAXXXXXXXGGXXPPXXXPPP 734
+ G P+ G + PP P P P PP
Sbjct: 459 PR--VPPPGAPHPRVPPPGAPHPRV---PPPGAPHPRVPPPGAPHQRVPPPGAPHPRVPP 513
Query: 735 PFXGXXXXXXTXXXXXRPXPXFFFXPXXG--GXPXPXLPPGGXXXPPXXPXXXXFXXXPP 908
P R P P G P P +PP G P P PP
Sbjct: 514 PGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGASHPRVPPPGAPHPRVPP 573
Query: 909 PRGP 920
P P
Sbjct: 574 PGAP 577
Score = 30.3 bits (65), Expect = 2.3
Identities = 40/181 (22%), Positives = 48/181 (26%), Gaps = 3/181 (1%)
Frame = +3
Query: 387 GFPPPKXXXXGEKXXLKTPP-LXXRKIXXXGAPPXFXXPPXAXXXXXXXXGGRXXPXXKK 563
G P P+ G PP ++ GAP PP A G P +
Sbjct: 425 GAPHPRVPPPGAPHPRFPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGA---PHPR- 480
Query: 564 NXXXXGXXXPKXGGGGGXXKKXFXGPPXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPPFX 743
G P+ G ++ PP P P P PPP
Sbjct: 481 -VPPPGAPHPRVPPPGAPHQRV---PPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGA 536
Query: 744 GXXXXXXTXXXXXRPXPXFFFXPXXG--GXPXPXLPPGGXXXPPXXPXXXXFXXXPPPRG 917
R P P G P P +PP G P P PPP
Sbjct: 537 PHPRVPPPGAPHPRVPPPGASHPRVPPPGAPHPRVPPPGAPHPRVPPPGTPHPRVPPPGA 596
Query: 918 P 920
P
Sbjct: 597 P 597
Score = 29.5 bits (63), Expect = 4.1
Identities = 45/205 (21%), Positives = 53/205 (25%), Gaps = 4/205 (1%)
Frame = +3
Query: 318 AXPPXLKXILFGPPXFPXXX-PXGGFPPPKXXXXGEKXXLKTPP-LXXRKIXXXGAPPXF 491
A PP PP P G P+ G PP +++ GAP
Sbjct: 371 ALPPGEPYARMPPPGATHPRVPSPGASHPRVPPPGAPHPRVPPPGASHQRVRPPGAPHPR 430
Query: 492 XXPPXAXXXXXXXXGGRXXPXXKKNXXXXGXXXPKXGGGGGXXKKXFXGPPXXPPXPGAX 671
PP A G P + G P+ G + PP P P
Sbjct: 431 VPPPGAPHPRFPPPGA---PHPR--VPPPGAPHPRVPPPGAPHPRV---PPPGAPHPRVP 482
Query: 672 GAXXXXXXXGGXXPPXXXPPPPFXGXXXXXXTXXXXXRPXPXFFFXPXXG--GXPXPXLP 845
P PPP R P P G P P +P
Sbjct: 483 PPGAPHPRVPPPGAPHQRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVP 542
Query: 846 PGGXXXPPXXPXXXXFXXXPPPRGP 920
P G P P PPP P
Sbjct: 543 PPGAPHPRVPPPGASHPRVPPPGAP 567
>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
Length = 421
Score = 31.9 bits (69), Expect = 0.77
Identities = 30/116 (25%), Positives = 34/116 (29%), Gaps = 5/116 (4%)
Frame = +3
Query: 579 GXXXPKXGGGGGXXKKXFXGPPXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPPF-----X 743
G P GG G + PP P PG G PP PPP+
Sbjct: 160 GTQPPGQGGYPGYNQP----PPGHYPAPGQPGGYYPPPGGYQQPPPGGYAPPPYVPQEGG 215
Query: 744 GXXXXXXTXXXXXRPXPXFFFXPXXGGXPXPXLPPGGXXXPPXXPXXXXFXXXPPP 911
G P P + P G P PP G P P + PPP
Sbjct: 216 GIPPQNHPLTNYPAPPPQGYAPPPGG---YPGAPPAGGY--PGAPPPGGYPGGPPP 266
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 31.5 bits (68), Expect = 1.0
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 639 PPXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPPFXG 746
PP PP PG GG PP PPP F G
Sbjct: 677 PPPPPPLPGGAAPPPPPPIGGGAPPP---PPPGFGG 709
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = +3
Query: 810 PXXGGXPXPXLPPGG--XXXPPXXPXXXXFXXXPPPRGP 920
P G P P PPGG PP P PPP P
Sbjct: 656 PEAGPPPPPPPPPGGQAGGAPPPPPPPLPGGAAPPPPPP 694
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +2
Query: 635 GXPPXXPXPGGGGRXXXXSXXXXKXPXXXXPPPPXXXG 748
G PP P P GG P PPPP G
Sbjct: 659 GPPPPPPPPPGGQAGGAPPPPPPPLPGGAAPPPPPPIG 696
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 31.1 bits (67), Expect = 1.3
Identities = 28/101 (27%), Positives = 29/101 (28%), Gaps = 7/101 (6%)
Frame = +3
Query: 639 PPXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPPFXGXXXXXXTXXXXXRP-XPXFFFXP- 812
PP P PGA G G PP PP G P P P
Sbjct: 208 PPGPPGLPGAPGPKGPPGTNGPLGPPGDVGPPGNPGGPGYQGNHGNPAGPQGPNGLPGPN 267
Query: 813 ---XXGGXPXPXLPPG--GXXXPPXXPXXXXFXXXPPPRGP 920
G P PPG G P P P P+GP
Sbjct: 268 GILGPPGPPGDMGPPGLPGPPGPQMPPGPPGLPGAPGPKGP 308
Score = 30.7 bits (66), Expect = 1.8
Identities = 28/101 (27%), Positives = 29/101 (28%), Gaps = 7/101 (6%)
Frame = +3
Query: 639 PPXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPPFXGXXXXXXTXXXXXRPXPXFF--FXP 812
PP P PGA G G PP PP G P P
Sbjct: 293 PPGPPGLPGAPGPKGPPGTNGPLGPPGDVGPPGNPGGPGYQGNHGNPAGPQGPNGQPGPP 352
Query: 813 XXGGXPXP---XLPPG--GXXXPPXXPXXXXFXXXPPPRGP 920
G P P PPG G P P P P+GP
Sbjct: 353 GINGPPGPLGDVGPPGLPGPPGPQMPPGPPGLPGAPGPKGP 393
Score = 29.9 bits (64), Expect = 3.1
Identities = 28/101 (27%), Positives = 28/101 (27%), Gaps = 7/101 (6%)
Frame = +3
Query: 639 PPXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPPFXGXXXXXXTXXXXXRPXPXFF--FXP 812
PP P PGA G G PP PP G P P
Sbjct: 378 PPGPPGLPGAPGPKGPPGTNGPLGPPGDVGPPGNPGGPGYQGNHGNPAGPQGPNGQPGPP 437
Query: 813 XXGGXPXP---XLPPG--GXXXPPXXPXXXXFXXXPPPRGP 920
G P P PPG G P P P P GP
Sbjct: 438 GINGPPGPLGDVGPPGLPGPPGPQMPPGPPGLPGAPGPNGP 478
Score = 29.9 bits (64), Expect = 3.1
Identities = 28/101 (27%), Positives = 28/101 (27%), Gaps = 7/101 (6%)
Frame = +3
Query: 639 PPXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPPFXGXXXXXXTXXXXXRPXPXFF--FXP 812
PP P PGA G G PP PP G P P
Sbjct: 463 PPGPPGLPGAPGPNGPPGINGPLGPPGEAGPPGNPGGPGYQGNHGNPAGPQGPNGQPGPP 522
Query: 813 XXGGXPXP---XLPPG--GXXXPPXXPXXXXFXXXPPPRGP 920
G P P PPG G P P P P GP
Sbjct: 523 GINGPPGPLGDVGPPGLPGPPGPQMPPGPPGLPGAPGPNGP 563
Score = 28.3 bits (60), Expect = 9.4
Identities = 26/96 (27%), Positives = 26/96 (27%), Gaps = 2/96 (2%)
Frame = +3
Query: 639 PPXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPPFXGXXXXXXTXXXXXRPXPXFFFXPXX 818
PP P PGA G G PP PP G P
Sbjct: 548 PPGPPGLPGAPGPNGPPGINGPLGPPGEAGPPGNPGGPGYQGNHGNPAGPQG----PNGQ 603
Query: 819 GGXPXPXLPPG--GXXXPPXXPXXXXFXXXPPPRGP 920
G P PPG G P P P P GP
Sbjct: 604 PGPPGVNGPPGEIGEIGPAGLPGPPGPASPPSPPGP 639
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +3
Query: 810 PXXGGXPXPXLPPGGXXXPPXXPXXXXFXXXPPPRGP 920
P GG P P PPGG PP P PP+ P
Sbjct: 647 PFFGGIPPP--PPGGGMFPPPPPPPPGGGVPGPPKPP 681
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 30.7 bits (66), Expect = 1.8
Identities = 33/122 (27%), Positives = 34/122 (27%), Gaps = 3/122 (2%)
Frame = +1
Query: 319 PPXPX*RXYCLAPPXSLXXPPGVV---FPPXKXXXXGKXXX*KPPPLXXEKXXXGGPPPX 489
PP P R PP PP PP G PPP + PPP
Sbjct: 287 PPPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTA----PPPPPPSRSSQRPPPPS 342
Query: 490 XXXPPXPXXXXXXXXGGEXXPXXKKTXXPXGXXXQXXGGGGGXKKKXFXXPPXXPPPRGR 669
PP P G P P G G PP PPP GR
Sbjct: 343 RGAPPPPSMGMAPPPVGGAAP-PPPPPPPVGGPPPPPPPIEGRPPSSLGNPPPPPPP-GR 400
Query: 670 XA 675
A
Sbjct: 401 GA 402
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 30.7 bits (66), Expect = 1.8
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = +1
Query: 358 PXSLXXPPGVV--FPPXKXXXXGKXXX*KPPPLXXEKXXXGGPPPXXXXPPXP 510
P +L PPG + PP PPP GPPP PP P
Sbjct: 455 PPNLPPPPGGMRGMPPPPMGMYPPPRGFPPPPFGPPPPFYRGPPPPRGMPPPP 507
Score = 29.9 bits (64), Expect = 3.1
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Frame = +3
Query: 822 GXPXPXL----PPGGXXXPPXXPXXXXFXXXPPPRG 917
G P P + PP G PP P + PPPRG
Sbjct: 467 GMPPPPMGMYPPPRGFPPPPFGPPPPFYRGPPPPRG 502
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.3 bits (65), Expect = 2.3
Identities = 24/94 (25%), Positives = 26/94 (27%)
Frame = +3
Query: 639 PPXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPPFXGXXXXXXTXXXXXRPXPXFFFXPXX 818
PP PP P A PP P PP + P P + P
Sbjct: 110 PPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPP---------SPNAPYPPPPNPPYPPPL 160
Query: 819 GGXPXPXLPPGGXXXPPXXPXXXXFXXXPPPRGP 920
P PP PP P PPP P
Sbjct: 161 YPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPP 194
Score = 29.9 bits (64), Expect = 3.1
Identities = 24/95 (25%), Positives = 25/95 (26%), Gaps = 1/95 (1%)
Frame = +3
Query: 639 PPXXPPXPGAXGAXXXXXXXGGXXPPXXXP-PPPFXGXXXXXXTXXXXXRPXPXFFFXPX 815
PP PP P A PP P PPP P P + P
Sbjct: 126 PPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPP--YPPPP 183
Query: 816 XGGXPXPXLPPGGXXXPPXXPXXXXFXXXPPPRGP 920
P P PP P PPP P
Sbjct: 184 NPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAP 218
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 30.3 bits (65), Expect = 2.3
Identities = 26/91 (28%), Positives = 26/91 (28%)
Frame = +3
Query: 639 PPXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPPFXGXXXXXXTXXXXXRPXPXFFFXPXX 818
PP PP A G P PPPP T P P
Sbjct: 138 PPPPPPIAPATGGPPPPPPIA---PATGGPPPP--PPIAPAATVPAPAVPLAAASPPPPS 192
Query: 819 GGXPXPXLPPGGXXXPPXXPXXXXFXXXPPP 911
GG P P PP PP P PPP
Sbjct: 193 GGPPPPPPPP----PPPPPPPILELAAPPPP 219
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 29.9 bits (64), Expect = 3.1
Identities = 20/70 (28%), Positives = 20/70 (28%)
Frame = +3
Query: 711 PPXXXPPPPFXGXXXXXXTXXXXXRPXPXFFFXPXXGGXPXPXLPPGGXXXPPXXPXXXX 890
PP PPPP P P P P P PP PP P
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQ---PPPPPPPPPPPPPPPPPPPPPPPPAPPP 422
Query: 891 FXXXPPPRGP 920
PPP P
Sbjct: 423 PPPPPPPPPP 432
Score = 28.3 bits (60), Expect = 9.4
Identities = 20/70 (28%), Positives = 21/70 (30%)
Frame = +3
Query: 711 PPXXXPPPPFXGXXXXXXTXXXXXRPXPXFFFXPXXGGXPXPXLPPGGXXXPPXXPXXXX 890
PP PPPP + P P P P P PP PP P
Sbjct: 365 PPPPPPPPP------PPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPP 418
Query: 891 FXXXPPPRGP 920
PPP P
Sbjct: 419 APPPPPPPPP 428
Score = 28.3 bits (60), Expect = 9.4
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = +3
Query: 711 PPXXXPPPPFXGXXXXXXTXXXXXRPXPXFFFXPXXGGXPXPXLPPGGXXXPPXXPXXXX 890
PP PPPP P P P P P PP PP P
Sbjct: 379 PPPPPPPPPSPPPPPQPPPPPPPPPPPPP---PPPPPPPPPPPAPPPPPPPPPPPPPALR 435
Query: 891 FXXXPP 908
PP
Sbjct: 436 LACAPP 441
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.9 bits (64), Expect = 3.1
Identities = 20/70 (28%), Positives = 21/70 (30%)
Frame = +3
Query: 711 PPXXXPPPPFXGXXXXXXTXXXXXRPXPXFFFXPXXGGXPXPXLPPGGXXXPPXXPXXXX 890
PP PP P +P P P G P P PP PP P
Sbjct: 349 PPTNNPPSPPPPTNNTPPPPPPTNKPPPP---PPPTNGPPPPP-PPTNGPPPPPPPTNGP 404
Query: 891 FXXXPPPRGP 920
PP GP
Sbjct: 405 PPPPPPTNGP 414
>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
Length = 593
Score = 26.2 bits (55), Expect(2) = 4.7
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 828 PXPXLPPGGXXXPPXXPXXXXFXXXPPP 911
P P PP PP P F PPP
Sbjct: 467 PPPPPPPPPPPPPPPPPPPPPFPPPPPP 494
Score = 21.4 bits (43), Expect(2) = 4.7
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 702 GXXPPXXXPPPP 737
G PP PPPP
Sbjct: 461 GQAPPPPPPPPP 472
>SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05)
Length = 346
Score = 29.1 bits (62), Expect = 5.4
Identities = 19/77 (24%), Positives = 22/77 (28%)
Frame = +3
Query: 636 GPPXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPPFXGXXXXXXTXXXXXRPXPXFFFXPX 815
GP PG+ G G P PP P + P + P
Sbjct: 51 GPQGTKGPPGSQGLSGVQGYPGAPGPRGRSPPGPPGIPGPRGLPGYRGPKGPPGYQGMPG 110
Query: 816 XGGXPXPXLPPGGXXXP 866
G P P PPG P
Sbjct: 111 IAGAPGPRGPPGPMGPP 127
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 28.7 bits (61), Expect = 7.1
Identities = 27/92 (29%), Positives = 28/92 (30%), Gaps = 2/92 (2%)
Frame = +3
Query: 600 GGGGGXXKKXFXGPPXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPPFXGXXXXXXTXXXX 779
G G K GPP P PGA G G PP PP G
Sbjct: 1786 GLAGPQGPKGMPGPPGPPGPPGAIGWKGNPGNPAG--PPGLDGPPGPPGPQGPKGWPGVP 1843
Query: 780 XRPXPXFFFXPXXGGXPXPXLPPG--GXXXPP 869
P P + G P PPG G PP
Sbjct: 1844 GPPGPPGAYG-WKGYPGNPAGPPGRDGIPGPP 1874
>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 642 PXXPPXPGAXGAXXXXXXXGGXXPPXXXPPPP 737
P PP PGA A G PP PPPP
Sbjct: 178 PPAPPPPGAPAAPPAPPFGG---PPSAPPPPP 206
>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
Length = 135
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = -3
Query: 745 PXXGGGGXXXGGXLPPXXXXXXXAPXAPGXGGXXGGP 635
P GG G G PP P PG GGP
Sbjct: 45 PPSGGYGYPPAGGYPPPQPGYAGGPPPPGIAPGIGGP 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,330,252
Number of Sequences: 59808
Number of extensions: 387231
Number of successful extensions: 1071
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2729039029
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -