Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_H04
         (984 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.44 
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    29   1.3  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   4.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.1  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    27   5.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 775 PPPPXXXGVXFXGPPXPFPXP 837
           PPPP   GV   GPP P P P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.9 bits (64), Expect = 0.58
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = +2

Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPPXXGAG 871
           PPPPG  G    GPPP  PP     PP   AG
Sbjct: 765 PPPPGVAG---AGPPPPPPP-----PPAVSAG 788



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = +3

Query: 774 PPPPXGXGGXXFXAPXPXPXPXXPXXPXXXGRXTVPXXKGV 896
           PPPP          P P P P  P  P   G    P   GV
Sbjct: 733 PPPPPAV---IVPTPAPAPIPVPPPAPIMGGPPPPPPPPGV 770


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 78  VMLRSVLFLTTGFLFAACLTSVMSDKPTTKPICEQAFGNSGPCFAYIKLY 227
           +++  + F   GFLF   L S++  KP    +   A  ++  CF +I LY
Sbjct: 145 LIIDHIHFQYNGFLFGLLLWSIVLAKPEKNMLLSAAIFSALICFKHIFLY 194


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 37  SLKILKTYTIESETSCC 87
           SLK+LKT   E+ET CC
Sbjct: 797 SLKVLKTLLNEAETICC 813


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/45 (28%), Positives = 14/45 (31%)
 Frame = +3

Query: 774  PPPPXGXGGXXFXAPXPXPXPXXPXXPXXXGRXTVPXXKGVXVXP 908
            P P    G      P P P    P  P   G   VP   G+   P
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 17/67 (25%), Positives = 18/67 (26%)
 Frame = +1

Query: 667  PXXPXQKPXSPXPXAXFFXFXVPXXXXXXXXSXLXNPPPPXXXGVXFXGPPXPFPXPXXP 846
            P    + P  P P A      VP             P P    G     PP P P    P
Sbjct: 1015 PKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIP 1074

Query: 847  XXPXXXG 867
              P   G
Sbjct: 1075 SIPAPSG 1081


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 429 PIYICNSFYTKLHRFIHQLEKRACVNSKVSVT 334
           P+ I NS  TK+H+F+  L ++      ++VT
Sbjct: 376 PVEISNSNVTKIHKFLDTLGRQVFTYEALNVT 407


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 776 PPPPGXXGFXFXGPPPXSPP 835
           PPPP   GF     PP  PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,069
Number of Sequences: 5004
Number of extensions: 43962
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)