Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_H04
         (984 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    29   0.16 
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   3.5  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    24   6.1  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -1

Query: 864 PXXGGXGVXXGGEXGGGPXKXNPXXPGGGG 775
           P  GG G   G   GGG     P   GGGG
Sbjct: 200 PGAGGGGSGGGAPGGGGGSSGGPGPGGGGG 229



 Score = 25.8 bits (54), Expect = 2.0
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = -1

Query: 879 EXXPAPXXGGXGVXXGGEXGGGPXKXNPXXPGGGG 775
           E  P    GG G    G  GG      P   GGGG
Sbjct: 197 EDEPGAGGGGSGGGAPGGGGGSSGGPGPGGGGGGG 231


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -1

Query: 834 GGEXGGGPXKXNPXXPGGGGVX*XRXXLXPPP 739
           G +  GGP    P  P GG V        PPP
Sbjct: 520 GRDLTGGPLGPPPPPPPGGAVLNIPPQFLPPP 551


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 184 LLAIRALVSPTLSYTRTIRRR 246
           L A+R  V P L+Y+  +RRR
Sbjct: 249 LTAVRGDVVPELTYSEVVRRR 269


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 713,488
Number of Sequences: 2352
Number of extensions: 12528
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 107707938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)