Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_H04
(984 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ... 35 0.072
At1g49270.1 68414.m05524 protein kinase family protein contains ... 33 0.29
At3g11030.1 68416.m01331 expressed protein contains Pfam domain ... 33 0.38
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 31 0.89
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 31 0.89
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 31 0.89
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 31 1.2
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 31 1.2
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 31 1.2
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 31 1.6
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 31 1.6
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 30 2.7
At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family... 30 2.7
At1g61080.1 68414.m06877 proline-rich family protein 30 2.7
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ... 29 4.7
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 29 6.3
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 28 8.3
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 28 8.3
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 28 8.3
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related 28 8.3
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex... 28 8.3
At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family... 28 8.3
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 8.3
At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein ... 28 8.3
>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
Length = 177
Score = 35.1 bits (77), Expect = 0.072
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Frame = -1
Query: 948 AXXXGKXFXGXPNXGRRXPPXXXEXXP--APXXGGXGVXXGG-EXGGGPXKXNPXXPGGG 778
A G+ F G P +R PP P G G GG E GG P P GGG
Sbjct: 95 AKPGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRGGPRGGDEKGGAPADFQPSFQGGG 154
Query: 777 G 775
G
Sbjct: 155 G 155
>At1g49270.1 68414.m05524 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 699
Score = 33.1 bits (72), Expect = 0.29
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPP---XXTPXPPXXGAGXXSXXQGG 895
PPPPG G + PP PP P PP +G + Q G
Sbjct: 251 PPPPGSMGTNWVSSPPPPPPGNWQPMPSPPAPVSGGANVIQSG 293
>At3g11030.1 68416.m01331 expressed protein contains Pfam domain
PF03005: Arabidopsis proteins of unknown function
Length = 451
Score = 32.7 bits (71), Expect = 0.38
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPP 856
PPPP PPP SPP +P PP
Sbjct: 64 PPPPPPTSPPPPSPPPPSPPPPSPPPP 90
Score = 32.3 bits (70), Expect = 0.51
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 773 TPPPPGXXGFXFXGPPPXSPPXXTPXPPXXGAG 871
+PPPP PPP SPP +P PP G
Sbjct: 71 SPPPPSPPP---PSPPPPSPPPPSPPPPAFAVG 100
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 31.5 bits (68), Expect = 0.89
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = +2
Query: 740 GGGXXFXLX*XTPPPPGXXGFXFXGPPPXSPPXXTPXPPXXGAG 871
GGG L PP PG GPPP PP PP G G
Sbjct: 660 GGGKSTNLPSARPPLPGG------GPPPPPPPPGGGPPPPPGGG 697
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -3
Query: 817 GAXKXKPPXPXGGGGXLXXXKXXPPPPPEXGKXKXXQXGXXK 692
G PP P GGG PPPPP G G K
Sbjct: 676 GGGPPPPPPPPGGGPPPPPGGGPPPPPPPPGALGRGAGGGNK 717
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPPXXGAGXXSXXQGG 895
PPPP G GPPP PP P PP G GG
Sbjct: 680 PPPPPPPG---GGPPP--PPGGGPPPPPPPPGALGRGAGG 714
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 31.5 bits (68), Expect = 0.89
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 773 TPPPPGXXGFXFXGPPPXSPPXXTPXP 853
T PPP PPP SPP TP P
Sbjct: 63 TAPPPANPPPPVSSPPPASPPPATPPP 89
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 31.5 bits (68), Expect = 0.89
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 773 TPPPPGXXGFXFXGPPPXSPPXXTPXP 853
T PPP PPP SPP TP P
Sbjct: 63 TAPPPANPPPPVSSPPPASPPPATPPP 89
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 773 TPPPPGXXGFXFXGPPPXSPPXXTPXPP 856
+PPPP + PP SPP +P PP
Sbjct: 551 SPPPPEPYYYSSPPPPHSSPPPHSPPPP 578
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPP 856
PPPP PPP PP +P PP
Sbjct: 474 PPPPPVYSPPPPSPPPPPPPVYSPPPP 500
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPP 856
PPPP PPP PP +P PP
Sbjct: 443 PPPPPVYSPPPPPPPPPPPPVYSPPPP 469
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPP 856
PPPP PPP PP +P PP
Sbjct: 489 PPPPPVYSPPPPPPPPPPPPVYSPPPP 515
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 773 TPPPPGXXGFXFXGPPPXSPPXXTPXPP 856
+PPPP + PPP PP PP
Sbjct: 425 SPPPPSPPPPVYSPPPPPPPPPPVYSPP 452
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +1
Query: 688 PXSPXPXAXFFXFXVPXXXXXXXXSXLXNPPPPXXXGVXFXGPPXPFPXPXXP 846
P P P + P S PPPP V PP P P P P
Sbjct: 426 PPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPP 478
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPP 856
PP P + PPP PP +P PP
Sbjct: 428 PPSPPPPVYSPPPPPPPPPPVYSPPPP 454
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 773 TPPPPGXXGFXFXGPPPXSPPXXTPXPPXXGAGXXS 880
+PPPP PPP SP P PP G S
Sbjct: 722 SPPPP----VIHQSPPPPSPEYEGPLPPVIGVSYAS 753
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = -1
Query: 921 GXPNXGRRXP--PXXXEXXPAPXXGGXGVXXGGEXGGGPXKXN---PXXPGGGG 775
G P G R P P P P G G GG G GP + PGGGG
Sbjct: 50 GGPGFGGRGPRGPGFGPRGPGPWSGPRGPRPGGGGGPGPGPWSGPRGPRPGGGG 103
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXT--PXPPXXGAGXXSXXQGGXR 901
PPPPG GPPP P PP G G S G R
Sbjct: 740 PPPPGLGRGTSSGPPPLGAKGSNAPPPPPPAGRGRASLGLGRGR 783
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPPXXGAGXXS 880
PPPP PPP S P PP G G S
Sbjct: 717 PPPPPLSKTPAPPPPPLSKTPVPPPPPGLGRGTSS 751
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPPXXGA 868
PPPP P P +PP P PP G+
Sbjct: 600 PPPPPPPPSSRSIPSPSAPPPPPPPPPSFGS 630
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPP 856
PPP G G + PPP S TP PP
Sbjct: 95 PPPYGGGGQGYYYPPPYSGNYPTPPPP 121
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 775 PPPPXXXGVXFXGPPXPFPXPXXPXXP 855
PPPP + GPP P P P P P
Sbjct: 31 PPPPPCICICNPGPPPPQPDPQPPTPP 57
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 815 PPPXSPPXXTPXPP 856
PPP SPP TP PP
Sbjct: 94 PPPLSPPQTTPPPP 107
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 815 PPPXSPPXXTPXPP 856
PPP SPP TP PP
Sbjct: 148 PPPLSPPQTTPPPP 161
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPP 856
PPPP + PPP SPP PP
Sbjct: 402 PPPPPPYVYPSPPPPPPSPPPYVYPPP 428
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/63 (23%), Positives = 19/63 (30%)
Frame = +1
Query: 667 PXXPXQKPXSPXPXAXFFXFXVPXXXXXXXXSXLXNPPPPXXXGVXFXGPPXPFPXPXXP 846
P P P P P + + P + PPPP PP +P P
Sbjct: 391 PPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPPYVYPPPPSPPYVYPPPPPS 450
Query: 847 XXP 855
P
Sbjct: 451 PQP 453
>At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family
protein similar to SWISS-PROT:Q15428
Length = 277
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPPXXGAG 871
PPPP G PPP + P PP G G
Sbjct: 242 PPPPPPSGLFPPPPPPMANNGFRPMPPAGGFG 273
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPP 856
PPPP G PPP PP PP
Sbjct: 537 PPPPPPPGTAAAPPPPPPPPGTQAAPP 563
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPP--XXTPXPPXXGAGXXSXXQGGXRLPXXGXP 922
PPPP G PPP PP P PP G + GG P P
Sbjct: 550 PPPPPPPGTQAAPPPPPPPPMQNRAPSPPPMPMG--NSGSGGPPPPPPPMP 598
>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 310
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 126 ACLTSVMSDKPTTKPICEQAFGN 194
AC+T++ S P PI EQ+F N
Sbjct: 13 ACVTAINSSPPPLSPISEQSFNN 35
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/65 (26%), Positives = 21/65 (32%)
Frame = +1
Query: 652 AFXGXPXXPXQKPXSPXPXAXFFXFXVPXXXXXXXXSXLXNPPPPXXXGVXFXGPPXPFP 831
A+ P P +P P P + P L PPP + PP P P
Sbjct: 499 AYPPPPPPPEYEPSPPPPSSEMS----PSVRAYPPPPPLSPPPPSPPPPYIYSSPPPPSP 554
Query: 832 XPXXP 846
P P
Sbjct: 555 SPPPP 559
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Frame = +2
Query: 773 TPPPPGXXGFX----FXGPPPXSPPXXTPXPP 856
+PPPP + PPP SPP +P PP
Sbjct: 512 SPPPPSSEMSPSVRAYPPPPPLSPPPPSPPPP 543
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -1
Query: 870 PAPXXGGXGVXXGGEXGGGPXKXNPXXPGGGG 775
P P GG G GG GGG GGG
Sbjct: 14 PIPSYGGDGYGGGGGYGGGDAGYGGRGASGGG 45
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -1
Query: 870 PAPXXGGXGVXXGGEXGGGPXKXNPXXPGGGG 775
P P GG G GG GGG GGG
Sbjct: 14 PIPSYGGDGYGGGGGYGGGDAGYGGRGASGGG 45
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPP 856
PPPP PPP SPP P PP
Sbjct: 1104 PPPPSQPP-----PPPLSPPPSPPPPP 1125
>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
Length = 1069
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 779 PPPGXXGFXFXGPPPXSPPXXTPXPPXXGAGXXSXXQG 892
P G G GPPP S P PP G+G G
Sbjct: 150 PAFGPSGSVAAGPPPGSRPMAFGSPPPVGSGMSMPPSG 187
>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 494
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 773 TPPPPGXXGFXFXGPPPXSPPXXTPXPPXXGAGXXS 880
+PPPP PPP SP P PP G S
Sbjct: 455 SPPPPPVH---HSSPPPPSPEFEGPLPPVIGVSYAS 487
>At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 147
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPP 856
PPP G G+ PPP TP PP
Sbjct: 81 PPPYGGDGYGGYYPPPYYGNYGTPPPP 107
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPPXXG 865
PPPP PPP P P PP G
Sbjct: 386 PPPPPSAAAPPPPPPPKKGPAAPPPPPPPG 415
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +2
Query: 776 PPPPGXXGFXFXGPPPXSPPXXTPXPP 856
PPPPG G GPPP PP PP
Sbjct: 411 PPPPGKKG---AGPPPP-PPMSKKGPP 433
>At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 384
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 855 GGXGVXXGGEXGGGPXKXNPXXPGGGG 775
GG G GG GGG N GGGG
Sbjct: 219 GGGGGSGGGSVGGGGSSSNVVVLGGGG 245
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,291,439
Number of Sequences: 28952
Number of extensions: 328860
Number of successful extensions: 2097
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1642
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2392460208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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