Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_H03
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.8  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   3.7  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.9  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    26   6.5  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   6.5  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    26   6.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.6  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    26   8.6  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 420  CSAGRVCEINEHGDAMCNCIKDC 488
            C+A R+C++ E       C+ DC
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 421 AAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTT 591
           A+  VSA +    TP V+++    +        + TS    + I+  T+S A AS T
Sbjct: 233 ASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSSSASASPT 289


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +1

Query: 436 SAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVXN 615
           S  S+++ +   T+  + P+  +       TS+  G  +   TASD  AS  +IS+   N
Sbjct: 53  STSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVI--TASDVSASNEIISSSTNN 110

Query: 616 TPXSKSSI 639
           +   + S+
Sbjct: 111 SIHQQVSV 118


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 490 PTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVXNTPXS 627
           P RQT     A T+ KP   +    + +   S+  +++ +  TP S
Sbjct: 110 PLRQTASPQVADTNLKPSLAVTNLNSDETNTSSEPVTSPLRTTPNS 155


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 325 FCLMVSLLVQALRHSVLDVFSLRD 254
           FCL ++ ++  LR+SV  V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 607 PRH*SELSRHKHRWRYTSQSD 545
           PRH  E  +  H W Y+S  D
Sbjct: 52  PRHHKEHKKSHHHWEYSSDDD 72


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +2

Query: 767  PPPPLPXXXGGXXXXXPPPLSXAPXPXFXXXG 862
            PPP  P    G     PPPL  +  P     G
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 161 CK*PRSLGP-TQEDPSSCLSMIRFYVKQAAIASKAGG 54
           CK  + L P + E+ S C+S +R+ V    + S  GG
Sbjct: 6   CKRLQKLAPKSPENQSKCISRLRYMVMLDQVESDEGG 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,395
Number of Sequences: 5004
Number of extensions: 52555
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)