Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_H03
(919 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 34 0.18
03_01_0515 - 3864796-3865425 33 0.24
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 33 0.42
03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845 30 2.2
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 30 3.0
06_03_1310 + 29238644-29240260 30 3.0
06_02_0010 - 10567351-10567605 30 3.0
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 3.9
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 29 5.2
12_02_0385 + 18424617-18425594,18426811-18426850,18427581-184276... 29 6.8
07_03_0600 + 19866757-19867218,19867920-19868429 29 6.8
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 29 6.8
03_02_0520 + 9092020-9092079,9092253-9093047 29 6.8
02_05_0219 + 26870970-26873117 29 6.8
01_03_0005 + 11568545-11569119,11569179-11569191 29 6.8
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 28 9.0
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 28 9.0
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 33.9 bits (74), Expect = 0.18
Identities = 20/62 (32%), Positives = 20/62 (32%)
Frame = -1
Query: 877 GGXXXPXXXKXGGXGPXKGXGXXXXXXAPXXXKGGGGXXXVXPXXGXXXXKXRSXPXXGG 698
GG P GG P G G P GGGG P G R GG
Sbjct: 93 GGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGG 152
Query: 697 GG 692
GG
Sbjct: 153 GG 154
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/62 (27%), Positives = 18/62 (29%)
Frame = -1
Query: 877 GGXXXPXXXKXGGXGPXKGXGXXXXXXAPXXXKGGGGXXXVXPXXGXXXXKXRSXPXXGG 698
G P GG GP + G P GGGG G GG
Sbjct: 167 GALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGGGGGEGGAPERVIGGGG 226
Query: 697 GG 692
GG
Sbjct: 227 GG 228
>03_01_0515 - 3864796-3865425
Length = 209
Score = 33.5 bits (73), Expect = 0.24
Identities = 19/64 (29%), Positives = 20/64 (31%)
Frame = +3
Query: 687 TSPPPPXXGXDLXFXXXXPXXGXTXKXPPPPFXXXGAXXXXXXPXPFXGPXPPXXXXXGX 866
+SPPPP G P T PPPP P P P PP
Sbjct: 59 SSPPPPAAGP--LMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSP 116
Query: 867 LXPP 878
PP
Sbjct: 117 PPPP 120
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.7 bits (71), Expect = 0.42
Identities = 20/64 (31%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Frame = +3
Query: 693 PPPPXXGXDLXFXXXXPXX--GXTXKXPPPPFXXXGAXXXXXXPXPFXGPXPPXXXXXGX 866
PPPP G P G PPPP G P F G PP G
Sbjct: 1123 PPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGV 1182
Query: 867 LXPP 878
PP
Sbjct: 1183 APPP 1186
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +2
Query: 767 PPPPLPXXXGGXXXXXPPPLSXAPXPXFXXXGXXGPP 877
PPPP P GG PP AP P GPP
Sbjct: 1184 PPPPPPRGHGGVGGPPTPP--GAPAPPMPPGVPGGPP 1218
>03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845
Length = 439
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = -1
Query: 367 FIRDLVEKVVNSGY--FCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSRGADPA 194
F+ D + SG+ + LM+ ALR +V F L R W FS G P
Sbjct: 9 FVVDCGRTIFFSGFNAYWLMMMAADPALRGAVATAFQQASAHGLNLARTWAFSDGGDQPL 68
Query: 193 VPTP 182
+P
Sbjct: 69 QSSP 72
>09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 29.9 bits (64), Expect = 3.0
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -1
Query: 235 LRRWTFSSRGADPAVPTPHTTSVGGANDRDH*GQRKKTLHLAFR*FVSM*SRRQSRRKP 59
LR+ T S+ A PA+P+ TS + DH G +K L + ++ + Q + KP
Sbjct: 950 LRQHTSSALQAQPALPSGPQTSQQPSAQEDHHGDPQKRLQATLQLAATLLQQIQQQSKP 1008
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 687 TSPPPPXXGXDLXFXXXXPXXGXTXKXPPPP 779
+SPPPP G L F P G PPPP
Sbjct: 506 SSPPPPPSGDKLPF---PPVYGVAYSSPPPP 533
>06_02_0010 - 10567351-10567605
Length = 84
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -3
Query: 782 EGGGGGFXCXAXXGXXXXKXXVXPXXRGGGGSQTXRFQAVR 660
EGGGGG G K P GGGG + AVR
Sbjct: 44 EGGGGGRGAVENGGGVDAKGEAAPARWGGGGRERDDGDAVR 84
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 767 PPPPLPXXXGGXXXXXPPPLSXAPXP 844
PPPP P G PPPL P P
Sbjct: 1182 PPPPPPLPSGPPPQPAPPPLPIQPPP 1207
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 478 SRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAY 579
+R P QTPDA A + T+P ++ +A +AY
Sbjct: 380 TRIQPYTQTPDADSATSGTQPAAKLNSISAMEAY 413
>12_02_0385 +
18424617-18425594,18426811-18426850,18427581-18427636,
18428032-18428151
Length = 397
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 539 LAIGLRSIPPAMLMPRQL*SVPWSXIPPLPNRVLR 643
+A+ LR++P +L L S+P S PP P +LR
Sbjct: 1 MALALRALPRRLLRHPLLHSMPLSSSPPDPRELLR 35
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +2
Query: 773 PPLPXXXGGXXXXXPPP-LSXAPXPXFXXXGXXGPPQ 880
PP P GG PPP +S AP P PPQ
Sbjct: 4 PPPPTMNGGHHAAPPPPQVSGAPPPPHGHYQQQPPPQ 40
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/51 (27%), Positives = 15/51 (29%)
Frame = +1
Query: 691 PPPPRXXGXTXXFXXXXPXXAXXXXPPPPPSXXXGRXXXXXTPXPFXGPXP 843
PPPP P PPPPP+ P P P P
Sbjct: 74 PPPPAPRPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLPPPPAPAPPP 124
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -1
Query: 280 VLDVFSLRDVPAAELLRRWTFSSR 209
VLD+ +++ +PA +L+RWT +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161
>02_05_0219 + 26870970-26873117
Length = 715
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +2
Query: 767 PPPPLPXXXGGXXXXXPPPLSXAPXPXFXXXGXXGPPQXXXXFFXPXXLFP 919
PPPP+ G PPL A P PP FF P FP
Sbjct: 232 PPPPMLFHEG---IDTKPPLLGAQPPGLLNHYHHQPPNPAATFFMPHPSFP 279
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 843 GXGAXERGGGXXXXXPPXXXGRGGGG 766
G G GGG PP G GGGG
Sbjct: 100 GGGGSSTGGGGIYYPPPTGGGGGGGG 125
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -1
Query: 343 VVNSGYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 209
+ + G F + L AL+ VLD+ ++ +PA +L+RWT +R
Sbjct: 177 ICSCGQFNRIGILCGHALK--VLDLMNIESLPAQYILKRWTREAR 219
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/37 (32%), Positives = 14/37 (37%)
Frame = +2
Query: 767 PPPPLPXXXGGXXXXXPPPLSXAPXPXFXXXGXXGPP 877
PPPP P G PPP++ F PP
Sbjct: 306 PPPPPPLANGPPRSIPPPPMTGGAMANFTPGAPPRPP 342
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,262,482
Number of Sequences: 37544
Number of extensions: 591626
Number of successful extensions: 2109
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1903
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -