Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_H02
(886 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 3e-13
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 68 1e-11
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 56 4e-08
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 9e-05
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 44 2e-04
SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3) 29 5.0
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40) 28 8.7
SB_27940| Best HMM Match : IncA (HMM E-Value=0.41) 28 8.7
SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6) 28 8.7
SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 72.9 bits (171), Expect = 3e-13
Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Frame = +3
Query: 165 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHD 344
+CY+ + + R + LP D+DP L CTH++Y +A I P T K+ + N DR
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWN--DDRL-- 454
Query: 345 NYRAITSLKAKYPGLTVLLSVGG-DADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGF 521
Y+ I LK K P L LL+VGG + ++ ++ ++ S+ RT FI+S + L+++Y F
Sbjct: 455 -YKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDF 513
Query: 522 XG 527
G
Sbjct: 514 DG 515
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 67.7 bits (158), Expect = 1e-11
Identities = 38/120 (31%), Positives = 60/120 (50%)
Frame = +3
Query: 168 CYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDN 347
CYY + S R P D+DP L CTH+L+ +A + T+KL EN H+
Sbjct: 25 CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHEL 77
Query: 348 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFXG 527
Y+ I +LK P L ++VGG E+ ++ ++ +++ R FI S + +GF G
Sbjct: 78 YQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTHGFDG 137
Score = 57.2 bits (132), Expect = 2e-08
Identities = 33/121 (27%), Positives = 58/121 (47%)
Frame = +3
Query: 165 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHD 344
+CYY + S R P D+DP L CTH+++ ++ + T+ + +N D
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-----DFD 461
Query: 345 NYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFX 524
Y+ I +LK P L ++VGG E+ ++ ++ +++ R FI S + GF
Sbjct: 462 LYKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFD 521
Query: 525 G 527
G
Sbjct: 522 G 522
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 56.0 bits (129), Expect = 4e-08
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Frame = +3
Query: 165 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGI-QPDTYKLVSLNENLDIDRTH 341
+CY+ + S R+ +A+ P D+ PA CTHL+Y +A I Q + + N+ D+ +
Sbjct: 22 VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWND----DKLY 75
Query: 342 DNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGF 521
+ A LK K P L LL+VGG ++ ++++ R FI+S + + +GF
Sbjct: 76 PRFNA---LKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGF 132
Query: 522 XG 527
G
Sbjct: 133 DG 134
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 44.8 bits (101), Expect = 9e-05
Identities = 34/121 (28%), Positives = 57/121 (47%)
Frame = +3
Query: 165 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHD 344
+CYY + + R A+ P ++DP+L CTH++Y +A + D KL N D
Sbjct: 25 VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN---DAA-- 76
Query: 345 NYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFX 524
Y+ + LK+ + LL+VGG P + ++ + R FI+ +L + F
Sbjct: 77 MYKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFD 133
Query: 525 G 527
G
Sbjct: 134 G 134
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Frame = +3
Query: 240 LSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDN--YRAITSLKAKYPGLTVLLSVGG 413
+ T LL G+A + + L + +D+ Y+ LK K PGL LL+VGG
Sbjct: 149 MQLLTLLLLGFASFAAASNYVHRCRHTLAMFEWNDDKLYKEFNDLKLKNPGLKTLLAVGG 208
Query: 414 DADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFXG 527
++ ++ + +R FI+S + + Q+ F G
Sbjct: 209 WNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDG 246
>SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 679
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 345 CRVFGLCPGSRLRTPAYRCQAGYRHSRTASGCRTTERDRGPTAAC 211
CR+FG + L YR Q Y+H+R C T E+ R C
Sbjct: 483 CRLFGAIFDNSLGKTRYRSQ--YKHTRRRHPCSTCEQYRSRNRNC 525
>SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3)
Length = 506
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 526 PXKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 398
P P C A S+ E + ++R D RR+ F G V PP N
Sbjct: 384 PDIPICVAASSSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 428
>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
Length = 1042
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 342 DNYRAITSLKAKYPGLT---VLLSVGGDADTEEPEKYNL 449
DNY + + YP T V+LS GDA T +KY L
Sbjct: 112 DNYASCKLIPLTYPYYTPPVVILSANGDASTLPSDKYAL 150
>SB_27940| Best HMM Match : IncA (HMM E-Value=0.41)
Length = 418
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -1
Query: 526 PXKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 398
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 227
>SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6)
Length = 329
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -1
Query: 526 PXKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 398
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 227
>SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -1
Query: 526 PXKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 398
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWISDDRGRRVDFKGKPVRLCPPPAN 227
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,825,438
Number of Sequences: 59808
Number of extensions: 408492
Number of successful extensions: 923
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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