Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_H02
         (886 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si...    35   0.062
At1g61810.1 68414.m06972 glycosyl hydrolase family 1 protein con...    30   2.3  
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    29   4.1  
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P...    29   4.1  
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to...    28   9.5  

>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 366

 Score = 35.1 bits (77), Expect = 0.062
 Identities = 26/95 (27%), Positives = 43/95 (45%)
 Frame = +3

Query: 243 SFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSVGGDAD 422
           S  THL   +A I   TY+++  + N     T        +++ + P +  LLS+GGD  
Sbjct: 45  SLFTHLFCAFADINTLTYQVIVSSRNKPKFSTFTQ-----TVRRRNPTVKTLLSIGGDFT 99

Query: 423 TEEPEKYNLLLESQQARTAFINSGVLLAEQYGFXG 527
                 +  +  +  +R  FI+S + LA   GF G
Sbjct: 100 YN--FAFASMASNPTSRKLFISSSIKLARSCGFHG 132


>At1g61810.1 68414.m06972 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase (GI:3820531) [Pinus
           contorta]; similar to beta-glucosidase GI:804655 from
           (Hordeum vulgare)
          Length = 520

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
 Frame = +3

Query: 267 GYAGIQPDTYKLVSLNENLDIDRTHDN----YRAITSLKAKYPGLTVLLSVGGDADTEEP 434
           GYA ++ D    V++ E  D++  H +    ++ +  LK +YP + + ++  G  D ++P
Sbjct: 368 GYA-LKLDRKGNVTIGELTDVNWQHIDPTGFHKMLNYLKDRYPNMPMFITENGFGDLQKP 426

Query: 435 EKYNLLLESQQARTAFINSGVLLAEQ 512
           E  +  L +   R  ++ SG L A Q
Sbjct: 427 ETTDKELLNDTKRIQYM-SGYLEALQ 451


>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 258 LLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITS 365
           LLYGY+G+    +KL      L+ +RT  ++ A+ S
Sbjct: 130 LLYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLS 165


>At2g33210.1 68415.m04069 chaperonin, putative similar to
           SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
           precursor (HSP60-2) [Cucurbita maxima]; contains
           Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
          Length = 585

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 372 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL 500
           AK  G   +L +GG ++TE  EK + + ++  A  A +  G++
Sbjct: 401 AKLSGGVAVLKIGGASETEVSEKKDRVTDALNATKAAVEEGIV 443


>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
           SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
           precursor (HSP60) [Arabidopsis thaliana]
          Length = 577

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 372 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL 500
           AK  G   +L +GG ++ E  EK + + ++  A  A +  G+L
Sbjct: 400 AKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIL 442


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,059,136
Number of Sequences: 28952
Number of extensions: 283381
Number of successful extensions: 651
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)