Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_H01
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.52
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 28 1.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.3
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 6.3
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 8.4
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.9 bits (64), Expect = 0.52
Identities = 24/63 (38%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Frame = -2
Query: 899 GGXXXXXGGXGXXP-GPXGXGXXXXGGXGXRXXXXEXPXAGGXGGGXXG--RGPNXQTAX 729
GG GG G P GP G G GG G GG GGG G GP
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGF--GGFGGEGH--HHGGHGGFGGGPGGFEGGPGGFGGG 243
Query: 728 PGG 720
PGG
Sbjct: 244 PGG 246
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = -2
Query: 899 GGXXXXXGGXGXXPGPXGXGXXXXGGXGXRXXXXEXPXAGGXGGGXXGRGPNXQTAXPGG 720
GG GG G G G GG G P G G G G GP PGG
Sbjct: 214 GGEGHHHGGHGGFGGGPGGFEGGPGGFGG------GPGGFGGGLGGFGGGPGGFGGGPGG 267
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Frame = +2
Query: 722 PXXXRFGY-WXPFPXPPLXXPXPPXXPXG 805
P FGY W PFP PPL P G
Sbjct: 914 PGFKLFGYQWFPFPEPPLNSGKPALSKEG 942
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/62 (27%), Positives = 18/62 (29%)
Frame = +1
Query: 715 AXPPGXAVWXLGPLPXXPPPXPPAXGXSXXXXRXPXPPXXXXPXPXGPGXXPXPPXXXXX 894
A PP A P+P PP S P P P P P P
Sbjct: 1148 AAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGV 1207
Query: 895 PP 900
PP
Sbjct: 1208 PP 1209
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/50 (30%), Positives = 16/50 (32%)
Frame = +1
Query: 751 PLPXXPPPXPPAXGXSXXXXRXPXPPXXXXPXPXGPGXXPXPPXXXXXPP 900
P+P P PP S P P P P G P P PP
Sbjct: 1084 PVPA-PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP 1132
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +1
Query: 721 PPGXAVWXLGPLPXXPPPXPPAXGXSXXXXRXPXPPXXXXP 843
PP V GP P PPP PPA P P P
Sbjct: 765 PPPPGVAGAGPPP--PPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = +1
Query: 712 SAXPPGXAVWXLGPLPXXPPPXPPAXGXSXXXXRXPXPPXXXXPXPXGPGXXPXPP 879
S PP AV P P P PPA P PP GP P PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPA----PIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/60 (26%), Positives = 16/60 (26%)
Frame = +1
Query: 721 PPGXAVWXLGPLPXXPPPXPPAXGXSXXXXRXPXPPXXXXPXPXGPGXXPXPPXXXXXPP 900
PP PLP PPP PP P P PP PP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPP 283
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Frame = +1
Query: 757 PXXPPPXPPAXGXSXXXXRXPXPPXX--XXPXPXG-PGXXPXPPXXXXXPP 900
P PP PP+ P PP P P G P P PP PP
Sbjct: 429 PSLPPSAPPSLPMGAPAA-PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +1
Query: 757 PXXPPPXPPAXGXSXXXXRXPXPP 828
P PPP PP G P PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = -3
Query: 286 HCGTSHGPTWS---TKSWTSGFSQSGSAI 209
+ GT H P+WS + +W +G S G AI
Sbjct: 45 YIGTRHNPSWSHPYSVTWLNGSSYYGLAI 73
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 8.4
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -2
Query: 899 GGXXXXXGGXGXXPGPXGXGXXXXGGXGXRXXXXEXPXA-GGXGGGXXGRG 750
GG GG G G G G G G R A GG GG GRG
Sbjct: 16 GGRGGFNGGRGGFGGGRG-GARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,319
Number of Sequences: 5004
Number of extensions: 45885
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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