Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G24
         (1003 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    30   0.45 
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    28   1.8  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   9.6  

>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
 Frame = +3

Query: 93  LFNSTNMDESNIPIDINIGKLQDWLISRRXVSKDWQKNVIAVREKINNAIXDMPAHQDXA 272
           L  STN +  N  +D+      D L+    V + +      +   +   I   P + D  
Sbjct: 136 LLQSTNENSINASLDV-----LDELVDESLVEEQFFIIAPQLASILYQFIFSAPPN-DSM 189

Query: 273 ALLSGRYINYFH-CLXIIEILKETEADTKNLFGRYGSQRMKDWQDV 407
            +L  R I  F  CL +IEI KET+A+   +F     Q +  W D+
Sbjct: 190 RMLQARGIKLFRSCLELIEIYKETKAEHVRVF---LEQILPPWMDM 232


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +3

Query: 117 ESNIPIDINIGKLQDWLISRRXVSKDWQKNVIAVREKINNAIXDMPAHQDXAALLSGRYI 296
           E+NI I  NI  +Q+W+  +    +++QK     +   +N +  +P       + +   +
Sbjct: 88  ENNIDIPKNIDAMQNWIFPQTQQYRNYQKE-FCEQALFHNLLLALPTGLGKTFIAAVVML 146

Query: 297 NYF 305
           NYF
Sbjct: 147 NYF 149


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 242 DGIVDLLSHSYDILLPIFRDXPTTDQPVLKLSYV-YIDGDVAFI 114
           DG++ L  H  D+   + +D P  D+   ++S V  + G V F+
Sbjct: 631 DGVITLGIHVADVAYYVKQDMPLDDEAANRVSEVQLLQGSVPFL 674


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,295
Number of Sequences: 5004
Number of extensions: 30331
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)