Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G24
         (1003 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-11|CAB54323.1|  489|Caenorhabditis elegans Hypothetical...   136   3e-32
U40940-2|AAM69090.1|  434|Caenorhabditis elegans Nuclear hormone...    29   6.9  

>AL110477-11|CAB54323.1|  489|Caenorhabditis elegans Hypothetical
           protein Y113G7B.16 protein.
          Length = 489

 Score =  136 bits (328), Expect = 3e-32
 Identities = 59/95 (62%), Positives = 72/95 (75%)
 Frame = +3

Query: 123 NIPIDINIGKLQDWLISRRXVSKDWQKNVIAVREKINNAIXDMPAHQDXAALLSGRYINY 302
           ++PIDI+  KL DWL+SRR  +KDWQK+V+A+REKI +AI DMP       LL G YINY
Sbjct: 4   DLPIDIHSSKLLDWLVSRRHCNKDWQKSVVAIREKIKHAILDMPESPKIVELLQGAYINY 63

Query: 303 FHCLXIIEILKETEADTKNLFGRYGSQRMKDWQDV 407
           FHC  IIEIL++TE DTKN  G Y SQRMKDWQ++
Sbjct: 64  FHCCQIIEILRDTEKDTKNFLGFYSSQRMKDWQEI 98



 Score = 31.9 bits (69), Expect = 0.74
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 434 LYLAEAXQMLVRNITYDIPGLNRQIAPDXQA 526
           +YLAEA Q+L R   Y+IP L +QI+   Q+
Sbjct: 107 VYLAEAAQILQRLAQYEIPALRKQISKMDQS 137


>U40940-2|AAM69090.1|  434|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 40, isoform b protein.
          Length = 434

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = +3

Query: 63  SRVLYQNLXALFNSTNMDESNI-PIDINIGKLQDWLISRRXVSKDWQKNV-IAVREKINN 236
           S  L  ++  +  +T+ +E  I P + ++ KL++W +    +  +W K + I  R  +N+
Sbjct: 193 SSCLLDDITYMAENTHENEGTIEPFECSVEKLREWFVRDLSLMLEWGKCLPIMERLLLND 252

Query: 237 AIXDMPAHQDXAALLSGRYI--NYFHCLXIIEI 329
            +  M A      L+   +   N F C  +I++
Sbjct: 253 KLALMKAFAPIFPLIQLAFYTRNEFECDIVIKL 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,297,258
Number of Sequences: 27780
Number of extensions: 177008
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2626021738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)