Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G24
         (1003 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06830.1 68418.m00772 expressed protein contains Pfam profile...    64   1e-10
At5g38850.1 68418.m04699 disease resistance protein (TIR-NBS-LRR...    30   2.8  
At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) simil...    30   2.8  

>At5g06830.1 68418.m00772 expressed protein contains Pfam profile:
           PF05600 protein of unknown function (DUF773)
          Length = 549

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
 Frame = +3

Query: 114 DESNIPIDINIGKLQDWLISRRXVSKDWQKNVIAVREKINNAIXDMPAHQD-XAALLSGR 290
           D  N+PIDI   +L +WL+ R+ +  DW+K V  +R KI      +P   D     L   
Sbjct: 6   DVQNLPIDITFSRLGEWLVDRKRIPADWRKRVAVIRVKILKEFSSLPKEIDPFFQTLDPE 65

Query: 291 YINYFHCLXIIEILKETEADTKNLFGR 371
            I Y     + EIL +T  +++N+FGR
Sbjct: 66  VIGYLEVKKVYEILLKTTPESRNIFGR 92



 Score = 33.5 bits (73), Expect = 0.23
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +2

Query: 434 LYLAEAXQMLVRNITYDIPGLNRQI 508
           +YL EA Q++++N+ Y+IP L +Q+
Sbjct: 112 IYLGEAAQIIIQNVNYEIPYLKKQV 136


>At5g38850.1 68418.m04699 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 986

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 288 RYINYFHCLXIIEILKETEADTKNLFGRYGSQRMKDWQDVXXNLS 422
           +Y+N   C  + E+       +  L   YG  R+K + D+  N+S
Sbjct: 664 KYLNMMGCRRLKEVPPHINLKSLELVNMYGCSRLKSFPDISTNIS 708


>At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 559

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -1

Query: 244 WMALLIFSL--TAMTFFCQSLETXLRLINQS 158
           W+ LL + L  TA  +FC SLE+  +L+N S
Sbjct: 98  WLLLLFYLLGHTASEYFCSSLESLSKLLNLS 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,743,821
Number of Sequences: 28952
Number of extensions: 174550
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2450812896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)