Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G23
         (989 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    27   0.30 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.69 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   2.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   2.1  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   2.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   2.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   2.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   2.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   2.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   2.8  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   2.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   2.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   6.4  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   6.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   8.5  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   8.5  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +3

Query: 846 PXPSLXXXRFPGPAXXPPXPXQXPPPPPXPPPXXPPPPPXXPP 974
           P PS+     PGPA  PP        PP P     P PP  PP
Sbjct: 153 PNPSIID---PGPAL-PPTGFLCNNYPPLPQVPPLPLPPIFPP 191


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -1

Query: 635 GGGGGXGGGXXXV--GXYTXXFMVISCKXCXTA 543
           GGGGG G G      G  +    V++CK C  A
Sbjct: 524 GGGGGSGSGNNQPPGGPSSHVSAVLTCKVCDQA 556


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 606 PPPPXPPXPPPXXP 647
           PPPP P   PP  P
Sbjct: 736 PPPPHPHHQPPRNP 749


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 606 PPPPXPPXPPPXXP 647
           PPPP P   PP  P
Sbjct: 628 PPPPHPHHQPPRNP 641


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +3

Query: 876 PGPAXXPPXPXQXPPPPPXPPPXXPPPPPXXPPXPPPP 989
           PG     P      PP    PP   P  P  P   P P
Sbjct: 25  PGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAP 62


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +3

Query: 876 PGPAXXPPXPXQXPPPPPXPPPXXPPPPPXXPPXPPPP 989
           PG     P      PP    PP   P  P  P   P P
Sbjct: 25  PGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAP 62


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +3

Query: 876 PGPAXXPPXPXQXPPPPPXPPPXXPPPPPXXPPXPPPP 989
           PG     P      PP    PP   P  P  P   P P
Sbjct: 25  PGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAP 62


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +3

Query: 876 PGPAXXPPXPXQXPPPPPXPPPXXPPPPPXXPPXPPPP 989
           PG     P      PP    PP   P  P  P   P P
Sbjct: 25  PGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAP 62


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +3

Query: 876 PGPAXXPPXPXQXPPPPPXPPPXXPPPPPXXPPXPPPP 989
           PG     P      PP    PP   P  P  P   P P
Sbjct: 25  PGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAP 62


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +3

Query: 876 PGPAXXPPXPXQXPPPPPXPPPXXPPPPPXXPPXPPPP 989
           PG     P      PP    PP   P  P  P   P P
Sbjct: 25  PGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAP 62


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +3

Query: 876 PGPAXXPPXPXQXPPPPPXPPPXXPPPPPXXPPXPPPP 989
           PG     P      PP    PP   P  P  P   P P
Sbjct: 25  PGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAP 62


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
 Frame = +3

Query: 597 NXXPPP-PXPPXPPPXXPGSRG 659
           N  P P P  P PPP   GS G
Sbjct: 202 NYGPEPVPSTPYPPPGSLGSMG 223


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +3

Query: 876 PGPAXXPPXPXQXPPPPPXPPPXXPPPPPXXPPXPPPP 989
           PG     P      PP    PP   P  P  P   P P
Sbjct: 25  PGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAP 62


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 597 NXXPPPPXPP 626
           N  PPPP PP
Sbjct: 728 NNAPPPPPPP 737


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 961 GGGGGXXGGGXGGGGGXCXGXGG 893
           G      GGG GGG     G GG
Sbjct: 85  GENNDDSGGGRGGGRDGDRGDGG 107


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = +3

Query: 876 PGPAXXPPXPXQXPPPPPXPPPXXPPPP 959
           P P    P   +     P  PP   PPP
Sbjct: 78  PSPKRSSPILAEKVSVSPTTPPTPSPPP 105


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 585 CVXXNXXPPPPXPPXPPP 638
           CV      P P PP  PP
Sbjct: 18  CVRKRPHSPEPYPPRCPP 35


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,094
Number of Sequences: 336
Number of extensions: 4771
Number of successful extensions: 34
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 28133776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)