Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_G20
(933 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 0.38
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 24 0.59
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.94
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 24 1.6
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 28 2.2
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 27 3.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.6
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 26 8.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect(2) = 0.38
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +3
Query: 825 PPPPXPXXXETXGXXPXPXXXXSXPTP 905
PPPP P G P P S P P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPP 363
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +3
Query: 735 PPQXXXPXXXLPLXWNXXGPPXXPXXQPXPPPPPXP 842
PP PL P P P PPP P P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 21.0 bits (42), Expect(2) = 0.38
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +3
Query: 813 QPXPPPPP 836
+P PPPPP
Sbjct: 310 RPPPPPPP 317
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.2 bits (50), Expect(2) = 0.59
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +3
Query: 735 PPQXXXPXXXLPLXWNXXGPPXXPXXQPXPPPPP 836
PP P LP +N PP P PPPPP
Sbjct: 173 PPSAAAPATSLPSDYN---PP------PPPPPPP 197
Score = 23.8 bits (49), Expect(2) = 0.59
Identities = 11/37 (29%), Positives = 12/37 (32%)
Frame = +3
Query: 816 PXPPPPPXPXXXETXGXXPXPXXXXSXPTPXFSXXPP 926
P PPPPP P + P S PP
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPP 225
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.94
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +3
Query: 732 PPPQXXXPXXXLPLXWNXXGPPXXPXXQPXPPPPPXPXXXETXGXXPXP 878
PPP P PP P PPPPP P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 792 PPXXPXXQPXPPPPPXP 842
PP P PPPPP P
Sbjct: 767 PPGVAGAGPPPPPPPPP 783
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 24.2 bits (50), Expect(2) = 1.6
Identities = 9/21 (42%), Positives = 9/21 (42%)
Frame = +3
Query: 816 PXPPPPPXPXXXETXGXXPXP 878
P PPPPP P G P
Sbjct: 945 PPPPPPPPPLVSAAGGKFVSP 965
Score = 22.2 bits (45), Expect(2) = 1.6
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 804 PXXQPXPPPPP 836
P P PPPPP
Sbjct: 942 PAFPPPPPPPP 952
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 643 SGXSRQPSIIXTXVHFIFNFHVDKIWRISF 554
S PS + T + +F+ H D++W+IS+
Sbjct: 192 SDYKADPSELPTKEYHVFHDHSDEVWQISY 221
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/49 (28%), Positives = 16/49 (32%)
Frame = +3
Query: 732 PPPQXXXPXXXLPLXWNXXGPPXXPXXQPXPPPPPXPXXXETXGXXPXP 878
PPP P + PP +P P PP ET P P
Sbjct: 79 PPPYTAEPEARYNSTIHNPMPPMSQAYRPPPTEPPTVPAYETSSEFPPP 127
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Frame = +3
Query: 780 NXXGPPXXPXXQPX--PPPPPXP 842
N PP P +P PPPPP P
Sbjct: 8 NPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -3
Query: 835 GGGGGXGXXXGXXGGPXXFQXRGXXXXGFXXWGGG 731
GG GG G GG F G G +GGG
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 328 DLVHH-HEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIVDLVNVVEKRQNLLLLF 170
DL HH + F GF VC+ ++ + + + D + L ++ +NVV N++ +F
Sbjct: 243 DLEHHDYRSFRGF-VCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVF 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,654
Number of Sequences: 5004
Number of extensions: 55306
Number of successful extensions: 241
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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