Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G19
         (955 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    26   0.50 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    26   0.50 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   2.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   4.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   4.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.1  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 12/45 (26%), Positives = 13/45 (28%)
 Frame = +1

Query: 703 HHXXPLPPXPTXPXXXXXRPXPPPPXXXPPXPXPXPXPPXPXXPP 837
           HH  P+ P    P      P    P            PP P  PP
Sbjct: 61  HHKAPIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPP 105


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +1

Query: 769 PPPXXXPPXPXPXPXPPXPXXPPLPSPXXPXGPP 870
           P P   P        PP P  PPLP P  P  PP
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPPLPLP--PIFPP 191



 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/39 (30%), Positives = 13/39 (33%)
 Frame = +1

Query: 718 LPPXPTXPXXXXXRPXPPPPXXXPPXPXPXPXPPXPXXP 834
           + P P  P         PP    PP P P   PP    P
Sbjct: 158 IDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/46 (28%), Positives = 14/46 (30%)
 Frame = +1

Query: 721 PPXPTXPXXXXXRPXPPPPXXXPPXPXPXPXPPXPXXPPLPSPXXP 858
           PP P        R  P P    PP   P   P     PP+     P
Sbjct: 163 PPPPPVYTHHYARYHPYPNFGVPPAGIPLQNPGLNLNPPVTQTQLP 208


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 846 PXPXPRAPXXPXPSPPPPP 902
           P P P  P  P P+P   P
Sbjct: 80  PEPDPEIPVAPEPAPLASP 98


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +1

Query: 790  PXPXPXPXPPXPXXPPLPSPXXP 858
            P     P PP    PPLP    P
Sbjct: 1371 PTEWHPPIPPTSEKPPLPEELKP 1393


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 694 PXPHHXXPLPPXPTXP 741
           P PHH  P  P  T P
Sbjct: 739 PHPHHQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 694 PXPHHXXPLPPXPTXP 741
           P PHH  P  P  T P
Sbjct: 631 PHPHHQPPRNPVGTNP 646


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,361
Number of Sequences: 336
Number of extensions: 3907
Number of successful extensions: 37
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26892580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)