Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_G17
(962 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 266 2e-71
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 56 4e-08
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 5e-08
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 42 0.001
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 33 0.46
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.46
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 1.1
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33) 31 1.8
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 29 7.4
SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 266 bits (651), Expect = 2e-71
Identities = 134/183 (73%), Positives = 145/183 (79%)
Frame = +2
Query: 191 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 370
VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1 VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60
Query: 371 DEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTA 550
DEQDRCITIKSTAIS+++EL E D +IT P ++ E+GFLINLIDSPGHVDFSSEVTA
Sbjct: 61 DEQDRCITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTA 118
Query: 551 ALRVTDGALXXXXXXXXXXXXTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYXT 730
ALRVTDGAL TETVLRQAIAERIKP+LFMNKMDR Y T
Sbjct: 119 ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQT 178
Query: 731 FQR 739
F R
Sbjct: 179 FAR 181
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 56.0 bits (129), Expect = 4e-08
Identities = 42/153 (27%), Positives = 67/153 (43%)
Frame = +2
Query: 227 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKST 406
D+ + R +I+H D GK+TLT+ L+ G I A A ++ IK
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSN-------------KIKKG 51
Query: 407 AISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 586
A S F E+E + + + + + IN++D+PGH DF+ + L D +
Sbjct: 52 ATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVI 110
Query: 587 XXXXXXXXXTETVLRQAIAERIKPILFMNKMDR 685
TE ++ I I+F+NKMDR
Sbjct: 111 DVAKGVEEQTEKLVEVCRMRNIPMIVFINKMDR 143
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 48.8 bits (111), Expect(2) = 5e-08
Identities = 23/54 (42%), Positives = 36/54 (66%)
Frame = +2
Query: 242 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 403
+RN S++AHVDHGKSTL D L+ G I+ + + + D + E++R IT+K+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGITVKA 1993
Score = 26.6 bits (56), Expect(2) = 5e-08
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 506 IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXXTETVLRQAIAERIKPILFMNKMD 682
+ + GHVDFS EV+ +L G + T + A + I +NK+D
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVVLLVDAAQGVQAQTVSNFFLAFNSELTIIPALNKID 2049
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 41.5 bits (93), Expect = 0.001
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +2
Query: 533 SSEVTAALRVTDGALXXXXXXXXXXXXTETVLRQAIAERIKPILFMNKMDR 685
+ +V+ A+R+ DGAL T VLRQA E I+P L +NK+DR
Sbjct: 21 AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDR 71
Score = 41.5 bits (93), Expect = 0.001
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +2
Query: 539 EVTAALRVTDGALXXXXXXXXXXXXTETVLRQAIAERIKPILFMNKMDR 685
+V+ A+R+ DGAL T VLRQA E I+P L +NK+DR
Sbjct: 93 QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDR 141
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.15
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +2
Query: 476 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXXTETVLRQAIAERIK 655
K G I ID+PGH F+S VTD + T +R A+ ++
Sbjct: 71 KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVP 130
Query: 656 PILFMNKMDR 685
I+ +NK+D+
Sbjct: 131 LIVAINKIDK 140
Score = 32.7 bits (71), Expect = 0.46
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 251 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 352
++++ HVDHGK+TL D+L + + AG G T+
Sbjct: 31 VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 32.7 bits (71), Expect = 0.46
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 224 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 319
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 32.7 bits (71), Expect = 0.46
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +2
Query: 188 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 367
+ N+ ++ + +MD IRN+++ H+ GK+ D L + A+ G+ +T
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171
Query: 368 K 370
+
Sbjct: 172 R 172
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 37 SLKILIVVXDSFYFDVDLRHPALARVLFQSVRHCWRMVVG 156
++K I DSF F+ DLR + SV H W++V G
Sbjct: 738 TIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPG 777
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.5 bits (68), Expect = 1.1
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 251 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 352
++V+ HVDHGK++L D + A +I G G T+
Sbjct: 94 VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126
Score = 28.7 bits (61), Expect = 7.4
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +2
Query: 497 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXXTETVLRQAIAERIKPILFMNK 676
I +D+PGH F++ +VTD + T+ + A A + I +NK
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQTKEAISHAQAAGVPIIFAINK 199
Query: 677 MDR 685
+D+
Sbjct: 200 IDK 202
>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
Length = 119
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 37 SLKILIVVXDSFYFDVDLRHPALARVLFQSVRHCWRMVVG 156
++K I DSF F+ DLR + SV H W++V G
Sbjct: 48 TIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPG 87
>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
Length = 300
Score = 28.7 bits (61), Expect = 7.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 570 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 448
P R A TCPGE ++L+ + +RWS V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281
>SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 28.3 bits (60), Expect = 9.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 571 SPCGC*LCVWCVCTNR 618
SPC C+WC C+ R
Sbjct: 18 SPCALYFCIWCECSKR 33
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,270,198
Number of Sequences: 59808
Number of extensions: 490594
Number of successful extensions: 1455
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2836293838
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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