Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_G17
(962 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 269 2e-72
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 266 1e-71
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 108 7e-24
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 108 7e-24
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 84 1e-16
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 83 2e-16
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 77 2e-14
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 77 2e-14
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 69 4e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 41 0.001
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 41 0.001
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 41 0.001
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 39 0.005
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 39 0.005
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 36 0.057
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 36 0.057
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 35 0.075
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 35 0.075
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 35 0.075
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 35 0.075
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.40
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.92
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 31 1.2
AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical... 31 1.6
U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone... 30 2.8
AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical ... 30 2.8
AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical ... 30 2.8
AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear recep... 30 2.8
AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical... 29 3.7
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 29 4.9
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 4.9
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 4.9
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 29 6.5
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 269 bits (660), Expect = 2e-72
Identities = 141/192 (73%), Positives = 152/192 (79%), Gaps = 8/192 (4%)
Frame = +2
Query: 188 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 367
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 368 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGH 523
KDEQ+RCITIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGH
Sbjct: 61 KDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGH 120
Query: 524 VDFSSEVTAALRVTDGALXXXXXXXXXXXXTETVLRQAIAERIKPILFMNKMDRXXXXXX 703
VDFSSEVTAALRVTDGAL TETVLRQAIAERIKP+LFMNKMDR
Sbjct: 121 VDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQ 180
Query: 704 XXXXXXYXTFQR 739
+ TFQR
Sbjct: 181 LGAEELFQTFQR 192
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 266 bits (653), Expect = 1e-71
Identities = 140/192 (72%), Positives = 151/192 (78%), Gaps = 8/192 (4%)
Frame = +2
Query: 188 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 367
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 368 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGH 523
KDEQ+RCITIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGH
Sbjct: 61 KDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGH 120
Query: 524 VDFSSEVTAALRVTDGALXXXXXXXXXXXXTETVLRQAIAERIKPILFMNKMDRXXXXXX 703
VDFSSEVTAAL VTDGAL TETVLRQAIAERIKP+LFMNKMDR
Sbjct: 121 VDFSSEVTAALGVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQ 180
Query: 704 XXXXXXYXTFQR 739
+ TFQR
Sbjct: 181 LGAEELFQTFQR 192
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 108 bits (259), Expect = 7e-24
Identities = 65/149 (43%), Positives = 87/149 (58%)
Frame = +2
Query: 239 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 418
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 419 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 598
E LINLIDSPGHVDFS EVT+AL ++D AL
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIE 118
Query: 599 XXXXXTETVLRQAIAERIKPILFMNKMDR 685
TE ++RQ I IL +NK+DR
Sbjct: 119 GICSQTEALIRQVIRNGQAMILVINKIDR 147
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 108 bits (259), Expect = 7e-24
Identities = 65/149 (43%), Positives = 87/149 (58%)
Frame = +2
Query: 239 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 418
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 419 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 598
E LINLIDSPGHVDFS EVT+AL ++D AL
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIE 118
Query: 599 XXXXXTETVLRQAIAERIKPILFMNKMDR 685
TE ++RQ I IL +NK+DR
Sbjct: 119 GICSQTEALIRQVIRNGQAMILVINKIDR 147
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 84.2 bits (199), Expect = 1e-16
Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 1/156 (0%)
Frame = +2
Query: 221 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITI 397
+MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +I
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSI 184
Query: 398 KSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 577
KS +S I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG +
Sbjct: 185 KSQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVV 229
Query: 578 XXXXXXXXXXXXTETVLRQAIAERIKPILFMNKMDR 685
TE +R AI ER+ L ++K+DR
Sbjct: 230 VMVDAHEGVMMNTERAIRHAIQERLAVTLCISKIDR 265
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 37 SLKILIVVXDSFYFDVDLRHPALARVLFQSVRHCWRMVVG 156
++ I V DSF F+ DLR + S H W++V G
Sbjct: 874 TISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPG 913
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 83.4 bits (197), Expect = 2e-16
Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
Frame = +2
Query: 224 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITIK 400
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +IK
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 401 STAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALX 580
S +S I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG +
Sbjct: 61 SQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVV 105
Query: 581 XXXXXXXXXXXTETVLRQAIAERIKPILFMNKMDR 685
TE +R AI ER+ L ++K+DR
Sbjct: 106 MVDAHEGVMMNTERAIRHAIQERLAVTLCISKIDR 140
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 37 SLKILIVVXDSFYFDVDLRHPALARVLFQSVRHCWRMVVG 156
++ I V DSF F+ DLR + S H W++V G
Sbjct: 749 TISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPG 788
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 76.6 bits (180), Expect = 2e-14
Identities = 50/147 (34%), Positives = 74/147 (50%)
Frame = +2
Query: 242 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 421
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R IT+K+ ++
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITVKAQTAAL- 97
Query: 422 FELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 601
+G+L+NLID+PGHVDFS+EV+ +L V DG L
Sbjct: 98 -------------------RHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
Query: 602 XXXXTETVLRQAIAERIKPILFMNKMD 682
T A + I+ I +NK+D
Sbjct: 139 VQAQTIANFWLAFEKNIQIIPVINKID 165
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 76.6 bits (180), Expect = 2e-14
Identities = 55/150 (36%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Frame = +2
Query: 242 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCITIKSTAIS 415
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E++R IT++S A++
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVN 84
Query: 416 MFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 595
+ + KG INLID+PGHVDF EV +RV DG +
Sbjct: 85 LDW--------------------KGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGS 124
Query: 596 XXXXXXTETVLRQAIAERIKPILFMNKMDR 685
T TV RQ+ ++ F+NKMD+
Sbjct: 125 AGVQPQTLTVWRQSSKFKLPAHFFINKMDK 154
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 69.3 bits (162), Expect = 4e-12
Identities = 53/148 (35%), Positives = 71/148 (47%)
Frame = +2
Query: 242 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 421
IRN+ + AH+D GK+T+T+ ++ AG I E R D D F
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRIDSMH--EVRGKDDVGATMD------------F 89
Query: 422 FELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 601
+LE + + I + G IN+ID+PGHVDF+ EV ALRV DGA+
Sbjct: 90 MDLERQRGITIQSA-ATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGG 148
Query: 602 XXXXTETVLRQAIAERIKPILFMNKMDR 685
T TV RQ + I F+NKMDR
Sbjct: 149 VQSQTFTVNRQLARYNVPFICFVNKMDR 176
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 41.1 bits (92), Expect = 0.001
Identities = 31/110 (28%), Positives = 51/110 (46%)
Frame = +2
Query: 248 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 427
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 108
Query: 428 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 577
++ I P + ++ N+I ++ + V AA TDG +
Sbjct: 109 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDGPM 150
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 41.1 bits (92), Expect = 0.001
Identities = 31/110 (28%), Positives = 51/110 (46%)
Frame = +2
Query: 248 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 427
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 109
Query: 428 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 577
++ I P + ++ N+I ++ + V AA TDG +
Sbjct: 110 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDGPM 151
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 41.1 bits (92), Expect = 0.001
Identities = 31/110 (28%), Positives = 51/110 (46%)
Frame = +2
Query: 248 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 427
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 109
Query: 428 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 577
++ I P + ++ N+I ++ + V AA TDG +
Sbjct: 110 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDGPM 151
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 39.1 bits (87), Expect = 0.005
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +2
Query: 236 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 415
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 221
Query: 416 MFFELEEKDLVFITNPDQREKSEKGF-LINLIDSPGHVDFSSEVTAALRVTDGAL 577
+ E EE+ +T R E I L+D+PGH DF S + D A+
Sbjct: 222 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAI 276
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 39.1 bits (87), Expect = 0.005
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +2
Query: 236 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 415
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 239
Query: 416 MFFELEEKDLVFITNPDQREKSEKGF-LINLIDSPGHVDFSSEVTAALRVTDGAL 577
+ E EE+ +T R E I L+D+PGH DF S + D A+
Sbjct: 240 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAI 294
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 35.5 bits (78), Expect = 0.057
Identities = 33/110 (30%), Positives = 50/110 (45%)
Frame = +2
Query: 248 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 427
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI I
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGY--- 103
Query: 428 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 577
E L ++ D S+ F+ N+I +D + V AA TDG +
Sbjct: 104 --ESPLRRYSHTDCPGHSD--FIKNMICGTSQMDVAVLVIAA---TDGVM 146
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 35.5 bits (78), Expect = 0.057
Identities = 33/110 (30%), Positives = 50/110 (45%)
Frame = +2
Query: 248 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 427
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI I
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGY--- 103
Query: 428 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 577
E L ++ D S+ F+ N+I +D + V AA TDG +
Sbjct: 104 --ESPLRRYSHTDCPGHSD--FIKNMICGTSQMDVAVLVIAA---TDGVM 146
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 35.1 bits (77), Expect = 0.075
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +2
Query: 224 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 403
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 404 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 577
+ + E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 35.1 bits (77), Expect = 0.075
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +2
Query: 224 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 403
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 404 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 577
+ + E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 35.1 bits (77), Expect = 0.075
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +2
Query: 224 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 403
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 404 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 577
+ + E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 35.1 bits (77), Expect = 0.075
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +2
Query: 224 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 403
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 404 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 577
+ + E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.40
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 224 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 319
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.92
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 227 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 352
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +2
Query: 488 GFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXXTETVLRQAIAERIKPILF 667
GFLI ID+PGH FS+ T + D A+ T L+ I + ++
Sbjct: 550 GFLI--IDTPGHESFSNLRTRGSSLCDFAILVVDIMHGLEPQTIESLKLLIKGKTPFVIA 607
Query: 668 MNKMDR 685
+NK+DR
Sbjct: 608 LNKIDR 613
>AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical
protein Y105C5A.23 protein.
Length = 415
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +3
Query: 279 ASQPSRTRWFPRPVSLLVREPERPVSLTRVRTNKTVASPLNLRPSLCSSSLKRKI*YSSQ 458
AS+ + + F R V+ ++EPE+P++ R+ + PL RPS+ S +
Sbjct: 271 ASEWNPLKTFSRHVN--IKEPEKPMTTPRIVVSDETEVPLTQRPSISPSEASAVMRTGVH 328
Query: 459 TLTS 470
T TS
Sbjct: 329 TSTS 332
>U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 456 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 280
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 279 P 277
P
Sbjct: 102 P 102
>AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical
protein Y102A5C.15 protein.
Length = 338
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 510 SIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMAVDLMVMQ 385
S+ L+ PF L +R +G+ + FSS S + MAV ++ +Q
Sbjct: 68 SVTLLGIPFILATRLAGYSLGLLKFSSYSFLVTMAVSVLSLQ 109
>AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical
protein C47F8.8 protein.
Length = 347
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 604 HTRHTVNNHKGSISDTECSCYFRREINV 521
H T H G IS T C+ +FRR I +
Sbjct: 15 HNTETTRRHFGIISCTACAAFFRRSIGM 42
>AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear receptor
NHR-16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 456 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 280
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 279 P 277
P
Sbjct: 102 P 102
>AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical
protein Y73F8A.1 protein.
Length = 716
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 173 HKPSKMVNFTVDEIRGMMDKKRN-IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET 349
H P K+ DE+ M ++KRN + N A+++ + +S+ S I G A
Sbjct: 610 HVPEKVAEDIADEVARMTEQKRNYMENHRDYANLNRRVDQMQESVFSIVDRIEGVNATLQ 669
Query: 350 RFTDTRKDEQD 382
R +QD
Sbjct: 670 TIEKQRVQQQD 680
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 29.1 bits (62), Expect = 4.9
Identities = 29/110 (26%), Positives = 44/110 (40%)
Frame = +2
Query: 248 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 427
NM + HVD GKST+ L+ G++ R E + + E+ R S + E
Sbjct: 111 NMVFVGHVDAGKSTIGGQLMFLTGMV-DKRTLEKYEREAK--EKGRESWYLSWCMDTNDE 167
Query: 428 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 577
EK E ++ F I +D+PGH F + D A+
Sbjct: 168 EREKGKTVEVGRAYFETEKRHFTI--LDAPGHKSFVPNMIVGANQADLAV 215
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 275 DRRGRSQTCCGYSASCPSSHG 213
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 275 DRRGRSQTCCGYSASCPSSHG 213
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 190 GEFHGRRDPWDDGQEAEYPQHVCDR 264
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 190 GEFHGRRDPWDDGQEAEYPQHVCDR 264
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,514,586
Number of Sequences: 27780
Number of extensions: 363713
Number of successful extensions: 1102
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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