Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G16
         (950 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       30   2.4  
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)             30   3.2  
SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12)            30   3.2  
SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)                   28   9.6  

>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 495 KDVLKITFPLKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTE 623
           K   K   P ++++ E+ +RP  +PT+   T + R   E  T+
Sbjct: 427 KKTTKPLLPEEEEEEEEEERPTPKPTKAKPTTIKRRPTEIPTK 469


>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
          Length = 781

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 522 LKQKQPEDSKRPVAEPTETTSTNVSRE 602
           ++Q Q + SKRP   P ETTS N+ ++
Sbjct: 182 IEQSQADRSKRPYDPPVETTSNNMRKK 208


>SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12)
          Length = 347

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 522 LKQKQPEDSKRPVAEPTETTSTNVSRE 602
           ++Q Q + SKRP   P ETTS N+ ++
Sbjct: 170 IEQSQADRSKRPYDPPVETTSNNMRKK 196


>SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -2

Query: 667 CGLSPSGRQR--PARXLSVVNSISSRLTFVEVVSVGSATGLLLSSGCFCFSGKVIFNTSF 494
           CG   S  Q   P    +VV +    + + +V  + + + + L +GCFC +G   +    
Sbjct: 372 CGTDFSSEQTQGPVINFNVVRANGECVGYTKVGQLANLSNIHLRTGCFCNTGACQYYLKL 431

Query: 493 S*TQLPSEFTSQGRFC 446
           S  ++ S F + G  C
Sbjct: 432 SNDKVKSHFQA-GHVC 446


>SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)
          Length = 151

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 462 DVNSEGSWVYEKDVLKITFPLKQKQPEDSK--RPVAEPTE 575
           DVN +G  VY KD L+  F L  K  +DSK  RP  +PT+
Sbjct: 112 DVNGKGRIVY-KDFLR-HFVLAMKPQDDSKLIRPKLQPTK 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,119,728
Number of Sequences: 59808
Number of extensions: 460796
Number of successful extensions: 1749
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2788625034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)