Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G15
         (946 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.78 
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  

>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 31.9 bits (69), Expect = 0.78
 Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
 Frame = +2

Query: 680 PYXXPPXXGFP----IPXPXNPGAIVXXFPXGSHXXLLXLXXPXPTPPXXXGPQXPSXXK 847
           PY  PP   +P     P P +P A     P   +   L    P P PP    P  P    
Sbjct: 123 PYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPP 182

Query: 848 XXXXXPPP 871
                PPP
Sbjct: 183 PNPPYPPP 190



 Score = 31.5 bits (68), Expect = 1.0
 Identities = 30/138 (21%), Positives = 39/138 (28%), Gaps = 4/138 (2%)
 Frame = +2

Query: 470 GXPPPXXGXXGPXFXXPPXKXXPPXSXFXXKISPRGXXXPXXXXXXXXXXXXXXQXXKIF 649
           G  PP      P +  PP    PP   +    +P     P                   +
Sbjct: 81  GGHPPTNFSPNPPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPY 140

Query: 650 FPNFLXEIXXPYXXPPXXGFP---IPXPXNPGAIVXXFPXGSHXXLLXLXXPXP-TPPXX 817
            P+       PY  PP   +P    P P NP      +P   +        P P  PP  
Sbjct: 141 PPS----PNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYP 196

Query: 818 XGPQXPSXXKXXXXXPPP 871
             P  P+        PPP
Sbjct: 197 PPPNAPNPPPPNPPYPPP 214


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +2

Query: 470 GXPPPXXGXXGPXFXXPPXKXXPPXSXFXXKISPRGXXXP 589
           G PPP  G   P    PP    PP   +     PRG   P
Sbjct: 467 GMPPPPMGMYPPPRGFPPPPFGPPPPFYRGPPPPRGMPPP 506


>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1584

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +2

Query: 692  PPXXGFPIPXPXNPGAIVXXFPXGSHXXLLXLXXPXPTPP 811
            PP   FP P P  PG ++       H  +L    P P PP
Sbjct: 1426 PPPMAFP-PMPPAPGQVITHLQHIVHHKILPPPPPPPAPP 1464


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,197,984
Number of Sequences: 59808
Number of extensions: 140128
Number of successful extensions: 273
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2764790632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)