Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G15
         (946 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59170.1 68418.m07416 proline-rich family protein contains pr...    30   2.6  
At5g51300.2 68418.m06360 splicing factor-related contains simila...    28   7.8  
At5g51300.1 68418.m06359 splicing factor-related contains simila...    28   7.8  

>At5g59170.1 68418.m07416 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 288

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +2

Query: 410 KXXPXQXXFXGXXKKXXXPXGXPPPXXGXXGPXFXXPPXKXXPP 541
           K  P Q  +    KK   P   PPP      P    PP K  PP
Sbjct: 164 KKYPPQEQYPPPIKKYPPPEKYPPPIKKYPPPEQYPPPIKKYPP 207



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/52 (28%), Positives = 17/52 (32%)
 Frame = +2

Query: 410 KXXPXQXXFXGXXKKXXXPXGXPPPXXGXXGPXFXXPPXKXXPPXSXFXXKI 565
           K  P    +    KK   P   PPP      P    PP K  PP   +   I
Sbjct: 125 KKYPPPEQYSPPFKKYPPPEQYPPPIKKYPPPEHYPPPIKKYPPQEQYPPPI 176


>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/64 (29%), Positives = 21/64 (32%)
 Frame = +2

Query: 680 PYXXPPXXGFPIPXPXNPGAIVXXFPXGSHXXLLXLXXPXPTPPXXXGPQXPSXXKXXXX 859
           P   PP  G P P P   G      P G++           T P   GP  PS       
Sbjct: 561 PPIAPP--GPPAPQPPTQGYPPSNQPPGAYPSQQYATGGYSTAPVPWGPPVPSYSPYALP 618

Query: 860 XPPP 871
            PPP
Sbjct: 619 PPPP 622


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/64 (29%), Positives = 21/64 (32%)
 Frame = +2

Query: 680 PYXXPPXXGFPIPXPXNPGAIVXXFPXGSHXXLLXLXXPXPTPPXXXGPQXPSXXKXXXX 859
           P   PP  G P P P   G      P G++           T P   GP  PS       
Sbjct: 561 PPIAPP--GPPAPQPPTQGYPPSNQPPGAYPSQQYATGGYSTAPVPWGPPVPSYSPYALP 618

Query: 860 XPPP 871
            PPP
Sbjct: 619 PPPP 622


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,991,677
Number of Sequences: 28952
Number of extensions: 142941
Number of successful extensions: 373
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2266029384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)