Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G14
         (934 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical ...    31   1.4  
At1g67220.1 68414.m07651 zinc finger protein-related similar to ...    29   3.3  
At5g48385.1 68418.m05980 expressed protein                             29   5.8  
At5g47280.1 68418.m05829 disease resistance protein (NBS-LRR cla...    29   5.8  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    28   7.7  

>At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical to
           DNA polymerase lambda GI:12053869 from [Arabidopsis
           thaliana]
          Length = 529

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +1

Query: 229 LWLYQG-DNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDI 405
           L LYQ  ++   +   A+  +   KID  ++D  ++ + +++  E+  +  + + ++ D 
Sbjct: 86  LMLYQWLEDSLTSGEKANEDLYVLKIDSEEVDKPKKSLPAISGSEDQSSPQKRTRYSPDA 145

Query: 406 GLDQPIESHRNTR 444
           G  + +ESH NT+
Sbjct: 146 GDFKGVESHSNTQ 158


>At1g67220.1 68414.m07651 zinc finger protein-related similar to
           SP|Q09472 E1A-associated protein p300 {Homo sapiens},
           SP|Q92793 CREB-binding protein {Homo sapiens}; contains
           Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
           PHD-finger, PF02135: TAZ zinc finger
          Length = 1357

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +2

Query: 317 SIQTEGMFAVSPIQKITRRPLNIHIIQLILDLTSRSRATVTQGTCGFCTLEGNCLF--QR 490
           S+Q     AVS +++ T   + +H    I+ L   S  +  +G C     E +C      
Sbjct: 596 SLQKRSKRAVSLVERFTEEEIKLH----IMSLKKPSTQSAVEGMCDLKEEEESCQLCDDG 651

Query: 491 FLRFNPKPIY 520
            L F P+P+Y
Sbjct: 652 TLLFPPQPLY 661


>At5g48385.1 68418.m05980 expressed protein
          Length = 558

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -1

Query: 469 LEGTKTAGPLCYGGSRSAGQVQYQLYDVNVQWTPRYFLDW*HCE-HTFGLDRAARRRFSK 293
           +E T++   L    S    Q+Q    ++  Q      L W   E H  GL+R+ +RRF +
Sbjct: 1   MEDTRSVASLMDSTSSKIQQLQKAFAELESQRAVTLNLKWKELEEHFHGLERSLKRRFHE 60

Query: 292 EESDGLRY 269
            E     Y
Sbjct: 61  LEDQEKEY 68


>At5g47280.1 68418.m05829 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 222 LASLSHCTCYRALCWRWPEGRLDEPLARSLSKEQHQN*T 106
           L SL + TCYR   W W E     P  R  + E+  N T
Sbjct: 581 LTSLCYVTCYREALWMWKEVEKAVPGLRIEATEKWFNMT 619


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 796 PPPFXVXPPDNXXXFPPXPTP 858
           PPP+   PP     +PP P+P
Sbjct: 420 PPPYVYPPPPPPYVYPPPPSP 440


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,088,691
Number of Sequences: 28952
Number of extensions: 364648
Number of successful extensions: 1141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2227127592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)