Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G13
         (887 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   1.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   7.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   7.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   7.4  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   9.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.8  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 769 NXPPPPXXPPXPNXXXPPPXXTTP 840
           N PP P  PP P     PP    P
Sbjct: 173 NYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +2

Query: 617 NXPXXPXXPXPPPPPXXPXKXXXP 688
           N P  P  P  P PP  P     P
Sbjct: 173 NYPPLPQVPPLPLPPIFPPTMINP 196


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/29 (34%), Positives = 10/29 (34%)
 Frame = +3

Query: 702 GXXXTPXPXXPXXXPXPXXXPPKXPPPPP 788
           G   TP P      P P    P  P P P
Sbjct: 66  GWQVTPLPSDGTTSPEPDPEIPVAPEPAP 94


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 712 PPPPHXXRXPXLFPXXXPPN 771
           PPPPH    P   P    P+
Sbjct: 736 PPPPHPHHQPPRNPVGTNPH 755


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 712 PPPPHXXRXPXLFPXXXPPN 771
           PPPPH    P   P    P+
Sbjct: 628 PPPPHPHHQPPRNPVGTNPH 647


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/44 (25%), Positives = 15/44 (34%)
 Frame = +1

Query: 538 PPQXPXXPXPPXQLSPQKHPXAPLFXKXSXXPPXSQXPTPPXAP 669
           PP  P    PP    P  +P    + + +      Q   PP  P
Sbjct: 21  PPHNPAYSPPPSYCDPWYNPYYYQYLQNAALYHKLQFRGPPRTP 64


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/30 (30%), Positives = 10/30 (33%)
 Frame = +1

Query: 694 PAGXXXPPPPHXXRXPXLFPXXXPPNXPPP 783
           P      PPPH    P       P + P P
Sbjct: 273 PKSASLSPPPHVYNPPDHIQQATPYSAPGP 302


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,725
Number of Sequences: 336
Number of extensions: 3680
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)