Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G11
         (998 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    35   0.021
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    31   0.25 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.59 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.78 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 34.7 bits (76), Expect = 0.021
 Identities = 23/75 (30%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
 Frame = +3

Query: 780 SRXXXPXXPXPXXVXPXFXPHXX--YPXAXSAXAGGXXPLPXDXXXLPPXXX--PPXPPL 947
           SR   P  P P  + P   P      P +    A    PLP      PP     P  PPL
Sbjct: 410 SRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPL 469

Query: 948 PXPXPXXXPLPXXXP 992
           P   P   P P   P
Sbjct: 470 PPAAPAPPPAPAPAP 484



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 911 PPXXXXPPTXPPPXPXSPXXXPSXPP 988
           PP      T  PP P  P   PS PP
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPP 429



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
 Frame = +2

Query: 809 PXXCAPXIPTTLXVSXRPFCXGWRXXSPXXGLXXPPXXXXPPTXPPPXPXS-PXXXPSXP 985
           P    P IP     +  P     R  +P            PP+ PP  P S P   P+ P
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447

Query: 986 P 988
           P
Sbjct: 448 P 448


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = -2

Query: 991 GXXXGRGXXXGXGXG--RGGXGGXXX--GGRXXQSXGRG 887
           G   GRG   G G G  RGG GG     GGR   S GRG
Sbjct: 27  GFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 16/35 (45%), Positives = 16/35 (45%)
 Frame = -2

Query: 991 GXXXGRGXXXGXGXGRGGXGGXXXGGRXXQSXGRG 887
           G   GRG   G G GRGG  G   GG      GRG
Sbjct: 20  GFNGGRG---GFGGGRGGARGGGRGGARGGRGGRG 51


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
 Frame = +3

Query: 795  PXXPXPXXVXPXFXPHXXYPXAXSAXAGGXXPLPXDXXXLPPXXXPPX--PPLPXPXPXX 968
            P  P P    P   P    P   +    G  P+P      PP   P    PP+P P    
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAP--SGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGV 1188

Query: 969  XPLP 980
             P+P
Sbjct: 1189 PPVP 1192



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 932  PTXPPPXPXSPXXXPSXPPP 991
            PT  PP P S    PS PPP
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPP 1065



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
 Frame = +3

Query: 795  PXXPXPXXVXPXFXPHXXYPXAXSAXAGGXXPLPXDXXXLP-PXXXPPXPPLPXPXPXXX 971
            P  P P    P   P    P       G   P+P      P P      PP+P P     
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVG-VPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237

Query: 972  PLP 980
            P+P
Sbjct: 1238 PVP 1240



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +2

Query: 890  PXXGLXXPPXXXXPPTXPPPXPXSPXXXPSXPPP 991
            P      PP    PP+  PP P      P  PPP
Sbjct: 1182 PKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPP 1213


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +2

Query: 911  PPXXXXPPTXPPPXPXSPXXXPSXPPP 991
            PP    PP   PP P  P   PS PPP
Sbjct: 1710 PPMSVPPPPSAPPMPAGP---PSAPPP 1733


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +2

Query: 911 PPXXXXP-PTXPPPXPXSPXXXPSXPPP 991
           PP    P P+ PPP P S    PS  PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPP 166



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
 Frame = +3

Query: 840 HXXYPXAXSAXAGGXXPLPXDXXXLPPXXXPPXPPLPXPXP-XXXPLPXXXP 992
           H     A +A      P        PP   PP P +P P P    P+P   P
Sbjct: 114 HIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP 165



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 911 PPXXXXPPTXPPPXPXSPXXXPSXPPP 991
           P     PPT  PP P  P   P+  PP
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPP 159


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 912 LPPXXXPPXPPLPXPXPXXXPLPXXXP 992
           LPP   PP PP P   P   P P   P
Sbjct: 4   LPPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -3

Query: 990 GGGXEGXXXGXXGXGGGXVGGXXXXGGXXSP 898
           GGG  G   G  G GGG  G     GG   P
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 890 PXXGLXXPPXXXXPPTXPPPXPXSPXXXPSXPPP 991
           P   +  P     P   PPP P      P  PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +2

Query: 914 PXXXXPPTXPPPXPXSPXXXPSXPPP 991
           P    PP  PPP   +    P  PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,535,273
Number of Sequences: 5004
Number of extensions: 13630
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)