Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G08
         (963 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.58 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   7.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   9.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.58
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 480 SHVLSCVIPLILWITVLPPLSELIPLAA 397
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -1

Query: 525 TAXLFTVP---GLLLAFCSHVL-SCVIPLILWITVLPPLSELIPL 403
           T  +F +P   G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 267 TVLVFYLPSDSGEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 18/71 (25%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
 Frame = +3

Query: 711 IPVPALXPPSXNAXAPXLSXSPPXRSXPFPXXXPXXPXPXLXSXP---PPXXSPXPXXXX 881
           I +P   PP         S + P  + P     P  P P L   P   P    P      
Sbjct: 76  IYIPQPRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQP 135

Query: 882 XPXHXPLLXLP 914
            P H  L   P
Sbjct: 136 RPPHPRLRREP 146


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 650 PPGXLPPXPPP 682
           PP   PP PPP
Sbjct: 338 PPKPAPPPPPP 348


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 480 SHVLSCVIPLILWITVLPPLSELIPL 403
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,036
Number of Sequences: 438
Number of extensions: 6421
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)