Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G03
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.7  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   2.9  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    27   5.1  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    26   6.7  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    26   6.7  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    26   8.8  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 295 PAFPKSPSSFCPKVPKTLPPPICLSQVTSRGCR 197
           P+ P  PS+  P  PK  PPP+  + V +   R
Sbjct: 185 PSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSR 217


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 286 PKSPS-SFCPKVPKTLPPPICLSQVTS 209
           P SP  SF  +VP  +PPP+C   V S
Sbjct: 165 PISPDYSFPLRVPINIPPPLCTPSVVS 191


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 240 GKVFGTLGQNDDGLFGKAGYNR-EIFNDDRGKLTGQAYGTRVLGPGGDSTNYG 395
           GK  G +G + D     +  +R   F   RG     +Y TRV G GG  T+YG
Sbjct: 166 GKFIG-VGSDGDSRISTSSKSRFPSFGSSRG-----SYRTRVYGDGGGFTDYG 212


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 497 GSG*EHPLFCXWYGLEGVRSQKTXRPTPSXDPP 595
           GSG   PL+  W G   + S +   P PS   P
Sbjct: 58  GSGSSAPLYPKWSGALSLASSRAASPAPSDSFP 90


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 526 AEKWVFLSRSHTPEPDAVIPDLPPICLFRSIVACAFLF 413
           AEKWV L+    P  D V+  +   C    +    F F
Sbjct: 357 AEKWVLLNGQRCPTCDRVVERIDGCCHMNCLCGTHFCF 394


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 331 LPRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPICLSQVTSRGCRLEGCPLIE 173
           +P++  ++SL   A  + PSS  P    ++P     S VTS    L   PL E
Sbjct: 1   MPKAKKRVSLASKASSRLPSSGKPSQQASIPNVELSSTVTSNSQVLNNDPLKE 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,756
Number of Sequences: 5004
Number of extensions: 64773
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)