Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G03
         (942 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   2.8  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   2.8  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   2.8  
U23511-13|AAC46800.1|  770|Caenorhabditis elegans Hypothetical p...    29   3.6  
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern...    29   4.8  
Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical pr...    29   6.4  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    29   6.4  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 342 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 491
           Q +G    G  GG+  N GG      +N Q T + N   GG  G+TASG G
Sbjct: 160 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 209


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 342 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 491
           Q +G    G  GG+  N GG      +N Q T + N   GG  G+TASG G
Sbjct: 181 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 230


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 342 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 491
           Q +G    G  GG+  N GG      +N Q T + N   GG  G+TASG G
Sbjct: 166 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 215


>U23511-13|AAC46800.1|  770|Caenorhabditis elegans Hypothetical
           protein C32D5.11 protein.
          Length = 770

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 295 PAFPKSPSSFCPKVPKTLPPPICLSQVTSRGCRLEGC 185
           P  P SPS+      + L   ICLS   S+ CR+EGC
Sbjct: 50  PVIP-SPSTSSNNPVEELQCTICLSTRFSQECRIEGC 85


>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
           (werner's syndrome) relatedprotein 1 protein.
          Length = 1056

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -2

Query: 314 KDLSVVTSFSKESIIVLSQSAKDLASP-HLFVPSDVTRVSP*GLPPDRIIFCVIKRSVN 141
           K L   TSF ++++ +   S+KD+A    LF+ +D  +    G P   II+C  K+ V+
Sbjct: 404 KPLITTTSFDRKNLYISVHSSKDMAEDLGLFMKTDEVKGRHFGGP--TIIYCQTKQMVD 460


>Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical
           protein F13E9.4 protein.
          Length = 409

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = +3

Query: 261 GQNDDGLFG--KAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGGRLDWANKNAQAT 434
           GQN   + G  + GY       D G    Q  G  V G GG S +YG +     +  Q  
Sbjct: 69  GQNQGSMQGYSQQGYGGNS-QQDYGYSQSQGSGMGVQGYGGSSQSYGQQAFAQQQRPQQG 127

Query: 435 IDLNRQIGGRSGMTASGS 488
              N    G SG  ASGS
Sbjct: 128 FQSN----GFSGQQASGS 141


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = +3

Query: 234 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGG 398
           GGG   G  G   DG +G  G+         G + G  YG   +G GG    YGG
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGG 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,386,006
Number of Sequences: 27780
Number of extensions: 399109
Number of successful extensions: 1073
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)