Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G03
         (942 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02425.1 68417.m00328 expressed protein                             31   0.84 
At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identic...    30   1.9  
At2g16630.1 68415.m01909 proline-rich family protein contains pr...    29   4.5  
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    29   5.9  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    28   7.8  
At1g16260.1 68414.m01947 protein kinase family protein contains ...    28   7.8  

>At4g02425.1 68417.m00328 expressed protein 
          Length = 262

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 132 NAEVYGPFDYAEDYSIRGQPSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNRE 308
           + E++G  ++A D S   + SRR  RD   +K+  GG  FG      D +  ++GY  E
Sbjct: 141 SGELFGEANWASDVSEAARNSRRERRDSGGEKEASGG--FG-FANGVDPMGNESGYGSE 196


>At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identical
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           pathogen infection (PMID:10380805)
          Length = 735

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +3

Query: 186 QPSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYG-TRV 362
           Q   +H +D    +Q       G L Q   G  G +  + +IF +D  K     Y  +R+
Sbjct: 356 QQRMKHLKDTKLREQFFEQNGGGMLTQRLSGA-GPSNVDVKIFTEDGMKKATNGYAESRI 414

Query: 363 LGPGGDSTNYGGRL 404
           LG GG  T Y G L
Sbjct: 415 LGQGGQGTVYKGIL 428


>At2g16630.1 68415.m01909 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 359

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -3

Query: 292 AFPKSPSSFCPKVP--KTLPPP 233
           A P  PSSFCPK P    +PPP
Sbjct: 139 AQPVQPSSFCPKPPTAPVMPPP 160


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 315 NDDRGKLTG--QAYGTRVLGPGGDSTNYGGR 401
           N+DRG   G    YG R  G GG  + YGGR
Sbjct: 52  NNDRGGYGGANSGYGGRGQGYGGRGSGYGGR 82


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +3

Query: 285 GKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTN----YGGRLDWANKNAQATIDLNRQ 452
           G   Y+   +NDD  K    A GT+  G  G+ +N    YG     ++   QAT ++   
Sbjct: 579 GSTDYDTSQYNDDMIKFRKMALGTQEYGTTGEYSNPTSDYGLYPSGSSSEGQATREMEMG 638

Query: 453 IGGRSGMTASG 485
              ++G   SG
Sbjct: 639 KIKKTGQGYSG 649


>At1g16260.1 68414.m01947 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 258 LGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGGRLD 407
           L Q    L G     +   ++D    T +   +R+LG GG  T Y G L+
Sbjct: 361 LQQQTSFLHGSVNRTKVFSSNDLENATDRFNASRILGQGGQGTVYKGMLE 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,522,236
Number of Sequences: 28952
Number of extensions: 384925
Number of successful extensions: 1077
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2256303936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)