Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G02
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.70 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    28   1.6  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   1.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    26   6.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   6.5  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    26   6.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   8.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = -1

Query: 823 PPPXXPXXXVXXPXXGPXXXKXFXXGXPPXXGGTXXPPPXGXXXPXPPXPXXP 665
           PPP  P   V  P   P          P   G    PPP G     PP P  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPP---PAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = -1

Query: 565 PPPXPPXXXXKKKXPXXXXXXFFPPXXGXPKNPXPPP 455
           PPP PP        P         P  G P  P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/48 (31%), Positives = 15/48 (31%)
 Frame = -3

Query: 809 PPXXGXXPXXGPXXXQXFXPGXPPXXGGXPXXPPXGXXXXXPPXPXXP 666
           PP     P   P       P  P   G  P  PP G     PP P  P
Sbjct: 735 PPPAVIVPTPAPAPIPV-PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 397 GGXGXPXXKXGGKXGFXGXXGGAXGFWGPXXGGEK 501
           GG G      GG+ G  G  GG+ G  G   GG K
Sbjct: 38  GGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 385 KKXLGGXGXPXXKXGGKXGFXGXXGGA-XGFWGPXXGG 495
           KK  G    P  + GG+ GF G  GG+  GF G   GG
Sbjct: 125 KKPKGARNGPAGR-GGRGGFRGGRGGSRGGFGGNSRGG 161


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/59 (32%), Positives = 19/59 (32%)
 Frame = +1

Query: 664 PGXXGXGGXXXXXPXGGXXGXPPXXGGXPGXXXCXXXGPXXGXXPXXGGXXXGXFXXGP 840
           PG  G GG       G   G     GG PG       G   G  P   G   G F  GP
Sbjct: 202 PGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG--FGGGPGGFGGGLGGFGGGP 258



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 664 PGXXGXGGXXXXXPXGGXXGXPPXXGGXPG 753
           PG  G G        GG  G P   GG PG
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 462 PPXXPXKXXFSPPFXXGXPPPP 397
           PP  P    F PP     PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 23.8 bits (49), Expect(2) = 3.3
 Identities = 10/19 (52%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
 Frame = -1

Query: 715 PPPXGXXXPX-PPXPXXPG 662
           PPP G   P  PP P  PG
Sbjct: 13  PPPPGFEPPSQPPPPPPPG 31



 Score = 21.4 bits (43), Expect(2) = 3.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 571 EXPPPXPPXXXXKKK 527
           + PPP PP    K+K
Sbjct: 23  QPPPPPPPGYVKKRK 37


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = -3

Query: 497 SPPXXGPQKPXAPPXXPKXPFFPPXFXXGXPXPP 396
           +PP      P APP  P  P  PP    G P  P
Sbjct: 435 APPSLPMGAPAAPPLPPSAPIAPP-LPAGMPAAP 467



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -3

Query: 497 SPPXXGPQKPXAPPXXPKXPFFPPXFXXGXPXPP 396
           S P   P  P  PP  P  P  P       P PP
Sbjct: 438 SLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +2

Query: 59  KENYSPIYLTFLTIHQIKRNYNA-----LIRKSKRTLTITVYNSRISCEYV 196
           +E  +  Y     I Q K  YNA     ++R S R +T  + +SR++ +YV
Sbjct: 24  REGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/53 (28%), Positives = 15/53 (28%)
 Frame = -1

Query: 823  PPPXXPXXXVXXPXXGPXXXKXFXXGXPPXXGGTXXPPPXGXXXPXPPXPXXP 665
            PPP             P   K      PP   GT  PP      P P  P  P
Sbjct: 910  PPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAP 962


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +2

Query: 59  KENYSPIYLTFLTIHQIKRNYNA-----LIRKSKRTLTITVYNSRISCEYV 196
           +E  +  Y     I Q K  YNA     ++R S R +T  + +SR++ +YV
Sbjct: 24  REGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +2

Query: 14  YRLTIRESLRFLSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRISC-- 187
           Y +++  ++  L     NY+P  L  ++       +  L+  SK+T+ + + +S+ +C  
Sbjct: 391 YSVSLWLNIESLMNDDGNYAPTTLFLISDFLKSTLFRLLLDASKKTVVVHIGSSKDTCVV 450

Query: 188 EYVKTVTNVINK 223
            +   +TN  +K
Sbjct: 451 NFSTPITNFFSK 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,447
Number of Sequences: 5004
Number of extensions: 36800
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)