Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G01
         (928 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  33   0.43 
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)                       30   3.1  
SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  

>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 32.7 bits (71), Expect = 0.43
 Identities = 17/60 (28%), Positives = 17/60 (28%)
 Frame = +1

Query: 700 PATXXXXPPPGPXPXXGXXPXXXXPXXXXPPXXXXXXXAXXXXXPPXPXPXXLXXXXXPP 879
           P      PPP P P     P    P    PP             PP P P  L     PP
Sbjct: 382 PPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPALRLACAPP 441



 Score = 31.9 bits (69), Expect = 0.76
 Identities = 17/63 (26%), Positives = 17/63 (26%)
 Frame = +1

Query: 691 SXVPATXXXXPPPGPXPXXGXXPXXXXPXXXXPPXXXXXXXAXXXXXPPXPXPXXLXXXX 870
           S  P      PPP P P     P    P    PP             PP P P       
Sbjct: 364 SPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPP 423

Query: 871 XPP 879
            PP
Sbjct: 424 PPP 426



 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/60 (26%), Positives = 16/60 (26%)
 Frame = +1

Query: 700 PATXXXXPPPGPXPXXGXXPXXXXPXXXXPPXXXXXXXAXXXXXPPXPXPXXLXXXXXPP 879
           P      PPP P P     P    P    PP             PP P P        PP
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPP 430



 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/60 (26%), Positives = 16/60 (26%)
 Frame = +1

Query: 700 PATXXXXPPPGPXPXXGXXPXXXXPXXXXPPXXXXXXXAXXXXXPPXPXPXXLXXXXXPP 879
           P      PPP P P     P    P    PP             PP P P        PP
Sbjct: 373 PPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPP 432


>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1705

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 224  NNHHSYAENCNLHDANCLQTK 162
            +NH  YA NC+ +DANC  TK
Sbjct: 1136 SNHSYYAHNCH-YDANCTNTK 1155



 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 224 NNHHSYAENCNLHDANCLQTK 162
           +NH  YA NC   DANC  TK
Sbjct: 194 SNHSHYAHNCQ-SDANCTNTK 213



 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 224 NNHHSYAENCNLHDANCLQTK 162
           +NH  YA NC   DANC  TK
Sbjct: 634 SNHSHYAHNCQ-SDANCTNTK 653



 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 221  NHHSYAENCNLHDANCLQTK 162
            NH  YA NC+  DANC  TK
Sbjct: 1337 NHSHYAHNCH-SDANCTNTK 1355


>SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +1

Query: 457 KPTGRIHRISIKDRIVFSITP 519
           +PTGR+HR+   D+ VFS+TP
Sbjct: 376 EPTGRVHRVP-DDQGVFSVTP 395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,154,085
Number of Sequences: 59808
Number of extensions: 306783
Number of successful extensions: 979
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2693287426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)