Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G01
         (928 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29614-9|AAA68807.1|  232|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   3.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   3.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   3.6  
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    29   6.2  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   6.2  

>U29614-9|AAA68807.1|  232|Caenorhabditis elegans Hypothetical
           protein F18E9.1 protein.
          Length = 232

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 258 RQPIGFPAIQSTAPPEDALGNRFGDDISTTTIRLPIE 368
           RQ   FP    +A PE +L  R  DD  + +  +P+E
Sbjct: 55  RQAHTFPLAMKSATPESSLAIRLSDDCESQSNEIPVE 91


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/67 (26%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
 Frame = +1

Query: 685 PCSXVPATXXXXPPPGPX---PXXGXXPXXXXPXXXXPPXXXXXXXAXXXXXPPXPXPXX 855
           P    P T    PPP P    P  G  P    P    PP             PP P P  
Sbjct: 732 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791

Query: 856 LXXXXXP 876
           +     P
Sbjct: 792 MFAPMAP 798


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/67 (26%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
 Frame = +1

Query: 685 PCSXVPATXXXXPPPGPX---PXXGXXPXXXXPXXXXPPXXXXXXXAXXXXXPPXPXPXX 855
           P    P T    PPP P    P  G  P    P    PP             PP P P  
Sbjct: 732 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791

Query: 856 LXXXXXP 876
           +     P
Sbjct: 792 MFAPMAP 798


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/67 (26%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
 Frame = +1

Query: 685 PCSXVPATXXXXPPPGPX---PXXGXXPXXXXPXXXXPPXXXXXXXAXXXXXPPXPXPXX 855
           P    P T    PPP P    P  G  P    P    PP             PP P P  
Sbjct: 315 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 374

Query: 856 LXXXXXP 876
           +     P
Sbjct: 375 MFAPMAP 381


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/54 (29%), Positives = 16/54 (29%)
 Frame = +1

Query: 688 CSXVPATXXXXPPPGPXPXXGXXPXXXXPXXXXPPXXXXXXXAXXXXXPPXPXP 849
           C  VP      PPP   P  G  P    P    PP             PP P P
Sbjct: 81  CPYVPPAPLPPPPPPASPCCGPSPV---PAPCCPPPPAPAAPCCPPPPPPTPSP 131


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/66 (27%), Positives = 20/66 (30%)
 Frame = +1

Query: 652 IVPLLSXXXXXPCSXVPATXXXXPPPGPXPXXGXXPXXXXPXXXXPPXXXXXXXAXXXXX 831
           I+P+ S      CS  P       PP P P     P    P    PP             
Sbjct: 11  IIPIASSTFGGCCSMGPPPC----PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPP 66

Query: 832 PPXPXP 849
           PP P P
Sbjct: 67  PPPPPP 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,602,602
Number of Sequences: 27780
Number of extensions: 242495
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)