Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G01
         (928 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   5.2  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 198 VLCVAMMVIYCSAQRSPYAGR 260
           VL VA+  I C AQ + YAGR
Sbjct: 6   VLLVALAAI-CGAQGASYAGR 25


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 198 VLCVAMMVIYCSAQRSPYAGR 260
           VL VA+  I C AQ + YAGR
Sbjct: 6   VLLVALAAI-CGAQGASYAGR 25


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 305 FWGCRALNCRKTYWLSS-SVWRTLG*AVNNHHSYAENCNLHDANCLQTKI 159
           +W  +  NC   Y   S S W  +      HH++ + C+++D N   T++
Sbjct: 104 YWNTK--NCVNPYDRDSLSCWLQM----TKHHNFIKVCSVNDVNMTITEL 147


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 308 VFWGCRALNCRKTYWLSSSVWR 243
           ++WG  A N   TY +S   W+
Sbjct: 231 LWWGWLAFNSGSTYGVSGQRWQ 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,720
Number of Sequences: 438
Number of extensions: 3504
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)