Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_G01
         (928 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61080.1 68414.m06877 proline-rich family protein                   30   1.9  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    30   2.5  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    29   4.4  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    28   7.6  

>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/65 (24%), Positives = 20/65 (30%)
 Frame = +1

Query: 685 PCSXVPATXXXXPPPGPXPXXGXXPXXXXPXXXXPPXXXXXXXAXXXXXPPXPXPXXLXX 864
           P + +P      PPP P P          P    PP       +     PP P P  +  
Sbjct: 463 PPAVMPLKHFAPPPPPPLPPAVMPLKHFAPPPPTPPAFKPLKGSAPPPPPPPPLPTTIAA 522

Query: 865 XXXPP 879
              PP
Sbjct: 523 PPPPP 527



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/68 (26%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
 Frame = +1

Query: 685 PCSXVPATXXXXPPPGPXPXXGXXPXXXXP---XXXXPPXXXXXXXAXXXXXPPXPXPXX 855
           P   +P T    PPP P P     P    P       PP             PP P P  
Sbjct: 512 PPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPPPPPPPGTQAAPPPPPPPPMQ 571

Query: 856 LXXXXXPP 879
                 PP
Sbjct: 572 NRAPSPPP 579


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/58 (27%), Positives = 18/58 (31%)
 Frame = +1

Query: 685 PCSXVPATXXXXPPPGPXPXXGXXPXXXXPXXXXPPXXXXXXXAXXXXXPPXPXPXXL 858
           P + +PA     PPP P P          P    PP       A     P  P P  L
Sbjct: 647 PPTRIPAAKCAPPPPPPPPTSHSGSIRVGPPSTPPPPPPPPPKANISNAPKPPAPPPL 704


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/54 (25%), Positives = 16/54 (29%)
 Frame = +1

Query: 688 CSXVPATXXXXPPPGPXPXXGXXPXXXXPXXXXPPXXXXXXXAXXXXXPPXPXP 849
           C+    +    PPP P P     P    P    PP             PP P P
Sbjct: 369 CASFGCSPPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPP 422



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/65 (24%), Positives = 16/65 (24%)
 Frame = +1

Query: 685 PCSXVPATXXXXPPPGPXPXXGXXPXXXXPXXXXPPXXXXXXXAXXXXXPPXPXPXXLXX 864
           P    P      PPP P P     P    P    P              PP P P     
Sbjct: 377 PSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPPYVYPP 436

Query: 865 XXXPP 879
              PP
Sbjct: 437 PPSPP 441



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/67 (23%), Positives = 16/67 (23%)
 Frame = +1

Query: 724 PPGPXPXXGXXPXXXXPXXXXPPXXXXXXXAXXXXXPPXPXPXXLXXXXXPPXXXXXXXP 903
           PP P P     P    P    PP             PP P P        PP       P
Sbjct: 379 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPPYVYPPPP 438

Query: 904 XXXXXXP 924
                 P
Sbjct: 439 SPPYVYP 445


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/52 (26%), Positives = 15/52 (28%)
 Frame = +1

Query: 724 PPGPXPXXGXXPXXXXPXXXXPPXXXXXXXAXXXXXPPXPXPXXLXXXXXPP 879
           PP P P     P    P    PP       +     PP P P        PP
Sbjct: 451 PPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPP 502



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/50 (28%), Positives = 14/50 (28%)
 Frame = +1

Query: 700 PATXXXXPPPGPXPXXGXXPXXXXPXXXXPPXXXXXXXAXXXXXPPXPXP 849
           P      PPP P P     P    P    PP             PP P P
Sbjct: 459 PPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPP 508


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,768,636
Number of Sequences: 28952
Number of extensions: 237796
Number of successful extensions: 704
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2207676696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)