Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F24
         (976 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.75 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.75 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   0.75 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.3  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   3.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.0  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    26   9.3  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 664  PPPXXXPPQIPPPXXGXPPPRXXXXPGXPP 753
            PP    P   PPP    PPP     P  PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +2

Query: 851  PXXCXXPXXXPPPLPPXXPXXPXXPTPXSTHP 946
            P     P    PP+P   P  P  P P S+ P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 652  SPRXPPPXXXPPQIPPPXXGXPPPRXXXXPGXPP 753
            +P  PPP   P  +PPP     PP     P  PP
Sbjct: 1704 APTPPPP---PMSVPPPPSA--PPMPAGPPSAPP 1732


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 655 PRXPPPXXXPPQIPPPXXGXPPP 723
           P  PPP   PP   PP    PPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 667 PPXXXPPQIPPPXXGXPPPRXXXXPGXP 750
           PP   PP  PPP  G  PP     P  P
Sbjct: 5   PPGNPPP--PPPPPGFEPPSQPPPPPPP 30


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
 Frame = +1

Query: 556 PTNXGXTPXKXFXPXGPXKXPNP*KGPGWXGFS----PRXPPPXXXPPQIPPPXXGXPP- 720
           P      P   F P G    P P   PG    +    P  PP    PP +P P  G P  
Sbjct: 487 PGTSAPLPPTTFAPPGVPLPPIP-GAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAV 545

Query: 721 PRXXXXPG 744
           P     PG
Sbjct: 546 PAMPGIPG 553


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +1

Query: 655  PRXPPPXXXPPQIPPPXXGXPP-PRXXXXPGXP 750
            P  PPP   PP +P P  G PP P     P  P
Sbjct: 1189 PPVPPPSEAPP-VPKPSVGVPPVPPPSTAPPVP 1220



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 655  PRXPPPXXXPPQIPPPXXGXPP 720
            P  PPP   PP +P P  G PP
Sbjct: 1208 PPVPPPSTAPP-VPTPSAGLPP 1228



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
 Frame = +1

Query: 652  SPRXPPPXXXPPQIPPPXXGXPP---PRXXXXPGXPP 753
            +P  P P    P +P P  G PP   P     P  PP
Sbjct: 1158 APPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 655  PRXPPPXXXPPQIPPPXXGXPPPRXXXXPGXPP 753
            P  P P    P +PPP    P P+     G PP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSV--GVPP 1209



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = +1

Query: 616  PNP*KGPGWXGFSPRXPPPXXXPPQIPPPXXGXPPPRXXXXPGXP 750
            P P    G     P  P P    P IP P    P P     P  P
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +1

Query: 652  SPRXPPPXXXPPQIPPPXXGXPPPRXXXXPGXPP 753
            +P  P P    P +PPP    P P      G PP
Sbjct: 1197 APPVPKPSVGVPPVPPPSTAPPVP--TPSAGLPP 1228


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/50 (28%), Positives = 18/50 (36%)
 Frame = +1

Query: 550 GFPTNXGXTPXKXFXPXGPXKXPNP*KGPGWXGFSPRXPPPXXXPPQIPP 699
           G P   G        P  P + P     PG+ G + R P P    P + P
Sbjct: 499 GMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGMNARGPVPAQGRPMMMP 548


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 884 PPLPPXXPXXPXXPTPXSTHP 946
           PPLPP  P  P  P P    P
Sbjct: 467 PPLPPAAPAPPPAPAPAPAAP 487



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 884 PPLPPXXPXXPXXPTPXSTHPP 949
           PPLPP  P  P  P      PP
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPP 468



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
 Frame = +1

Query: 652 SPRXPPPXXXPPQIPPP-XXGXPPPRXXXXPGXPP 753
           +P  P P   PP  PP      PP      P  PP
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +1

Query: 652 SPRXPPPXXXPPQIPPPXXGXPPPRXXXXPGXP 750
           +P  P     PP   PP    PPP     P  P
Sbjct: 129 APPTPQSELRPPTSAPPRPSIPPPSPASAPPIP 161


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 654 PKXPPPXXQXSXNPP 698
           PK PPP  + S NPP
Sbjct: 285 PKLPPPSHEESYNPP 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,835
Number of Sequences: 5004
Number of extensions: 21411
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)