Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F23
         (971 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   1.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.7  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   8.3  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 454 TVPINSSTLCATRTXTGLLC 513
           T+ INS T+C T +  G+ C
Sbjct: 146 TMEINSDTMCVTFSNLGIQC 165


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 901 SFPPXXPPXPPPXPPXXPP 957
           ++PP     P P PP  PP
Sbjct: 173 NYPPLPQVPPLPLPPIFPP 191


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 892 QKPSFPPXXPPXPPPXP 942
           +K S  P  PP P P P
Sbjct: 89  EKVSVSPTTPPTPSPPP 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,354
Number of Sequences: 336
Number of extensions: 2975
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27513178
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)