Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F23
         (971 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.78 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.3  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.4 bits (53), Expect = 0.78
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 570 VWRFSVFCWKXSGPAF 523
           VWRF   C+K  G AF
Sbjct: 4   VWRFPYLCYKNGGGAF 19


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 570 VWRFSVFCWKXSGPAF 523
           +WRF   C+K  G AF
Sbjct: 42  LWRFPYLCYKNGGGAF 57


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 570 VWRFSVFCWKXSGPAF 523
           +WRF   C+K  G AF
Sbjct: 95  LWRFPYLCYKNGGGAF 110


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 12/31 (38%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
 Frame = +1

Query: 874 SXQTSXQKPS--FPPXXPPXPPPXPPXXPPP 960
           S   S Q P    PP     PPP  P   PP
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 931 PPXPPXXPPPP 963
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 934 PXPPXXPPPPP 966
           P  P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,649
Number of Sequences: 438
Number of extensions: 5226
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32048835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)