Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F22
         (921 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    27   0.27 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.63 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.5  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   4.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   4.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   7.7  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +2

Query: 824 PXPXXPPXXXPPPPXPPXXXXPPXXXPPPXPP 919
           P P  PP        PP    PP   PP  PP
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191



 Score = 25.0 bits (52), Expect = 0.83
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 711 PXPXXPPPPXPPPXPP 758
           P P  PP P PP  PP
Sbjct: 176 PLPQVPPLPLPPIFPP 191



 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/29 (34%), Positives = 10/29 (34%)
 Frame = +2

Query: 644 PXXPPAPXPXXXPPPXXPPPXXPXPPPXP 730
           P  PP        PP    P  P PP  P
Sbjct: 162 PALPPTGFLCNNYPPLPQVPPLPLPPIFP 190



 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +2

Query: 644 PXXPPAPXPXXXPPPXXPP 700
           P  PP P P   PP    P
Sbjct: 178 PQVPPLPLPPIFPPTMINP 196


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 875 GGGXGGGGXGXXGXGG 828
           GGG GGG  G  G GG
Sbjct: 92  GGGRGGGRDGDRGDGG 107



 Score = 25.0 bits (52), Expect = 0.83
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 748 GGGXGGGGXXGXGXGGG 698
           GGG GGG     G GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108



 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -3

Query: 766 GXXGGXGGGXGGGGXXGXGXGGGG 695
           G      GG  GGG  G    GGG
Sbjct: 85  GENNDDSGGGRGGGRDGDRGDGGG 108


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 726 PPPPXPPPXPPXXP 767
           PPPP P   PP  P
Sbjct: 736 PPPPHPHHQPPRNP 749



 Score = 22.2 bits (45), Expect = 5.9
 Identities = 13/44 (29%), Positives = 14/44 (31%)
 Frame = +1

Query: 766 PXPXXXXSSLLLXPPXGPXXXPPXPXXPXPPPPXPPPXPXXXPP 897
           P P    S + L P   P    P       P   PPP     PP
Sbjct: 103 PIPVSMASKMGLAPTGHPGAALPFFCHNGDPLSQPPPAHMGIPP 146


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 726 PPPPXPPPXPPXXP 767
           PPPP P   PP  P
Sbjct: 628 PPPPHPHHQPPRNP 641


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = +1

Query: 805 PPXGPXXXPPXPXXPXPPPPXPPPXPXXXPP 897
           P  G     P P  P  P P P   P    P
Sbjct: 73  PSDGTTSPEPDPEIPVAPEPAPLASPLVQEP 103


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 717 PXXPPPPXPPPXPPXXP 767
           P  PP P PPP     P
Sbjct: 95  PTTPPTPSPPPEERLTP 111


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 711 PXPXXPPPPXPPPXPP 758
           P P  PP P PP   P
Sbjct: 176 PLPQVPPLPLPPIFAP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,108
Number of Sequences: 336
Number of extensions: 5429
Number of successful extensions: 44
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25754817
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)