Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F21
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    35   0.015
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.034
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.2  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   3.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.9  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 29/87 (33%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
 Frame = -1

Query: 939 GGGVXXXGGG--WGPPXPXXXGGAXPQGXXXXXXXGXXGGXGXXGXXGGXVXKIFGVPXX 766
           GGG    GGG    PP P   GG    G       G  G  G  G   G      G P  
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP-- 244

Query: 765 GGGXGGNLXXLXGXXGXKXXGIFGXXG 685
            GG GG L    G  G    G  G  G
Sbjct: 245 -GGFGGGLGGFGGGPGGFGGGPGGHGG 270


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.9 bits (74), Expect = 0.034
 Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
 Frame = +2

Query: 650 PFPXPRXIXFXNPXXPKIPXXFXPXXPXNXXRFPPXPPPXXGTPKI---FXTXPPXXPXX 820
           P P P  +    P  P +P    P  P      PP PP     P +       PP  P  
Sbjct: 416 PVPTPPSLPPSAP--PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAA 473

Query: 821 PXPPXXP 841
           P PP  P
Sbjct: 474 PAPPPAP 480



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
 Frame = +2

Query: 686 PXXPKIPXXFXPXX--PXNXXRFPPXPPPXXGTPKIFXTXPPXXPXXPXPP 832
           P  P IP    P      +    PP PPP  GT     + PP  P  P  P
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGT----VSSPPNSPPRPIAP 277


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/48 (33%), Positives = 17/48 (35%)
 Frame = +2

Query: 686  PXXPKIPXXFXPXXPXNXXRFPPXPPPXXGTPKIFXTXPPXXPXXPXP 829
            P  PK P    P  P      PP P P  G P +    P   P  P P
Sbjct: 1159 PPVPK-PSVAAPPVPAPSSGIPPVPKPAAGVPPV--PPPSEAPPVPKP 1203


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/55 (29%), Positives = 16/55 (29%)
 Frame = +2

Query: 677 FXNPXXPKIPXXFXPXXPXNXXRFPPXPPPXXGTPKIFXTXPPXXPXXPXPPXXP 841
           F  P  P  P    P  P      PP  PP    P       P  P  P  P  P
Sbjct: 498 FAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIP 552


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 20/61 (32%), Positives = 22/61 (36%)
 Frame = +2

Query: 650 PFPXPRXIXFXNPXXPKIPXXFXPXXPXNXXRFPPXPPPXXGTPKIFXTXPPXXPXXPXP 829
           P P P  +    P    IP    P  P      PP PPP    P +    PP  P  P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVP--PPAPIMGG--PPPPPP---PPGVAGAGPP--PPPPPP 782

Query: 830 P 832
           P
Sbjct: 783 P 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,404,952
Number of Sequences: 5004
Number of extensions: 14664
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)